Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 5.0e-166 587.8 321 100.0
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 4.1e-152 541.6 319 88.7
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 2.0e-138 496.1 423 66.9
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.4e-128 463.4 321 77.9
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 2.4e-107 392.9 277 74.4
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.5e-106 390.2 280 74.3
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.0e-105 387.5 266 77.4
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.3e-105 387.1 324 71.0
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 8.5e-105 384.4 324 69.8
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 1.9e-104 383.3 276 73.2
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 3.2e-104 382.5 263 75.7
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.5e-104 381.7 264 74.2
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 9.4e-104 380.9 270 74.4
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.6e-103 380.2 272 72.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.1e-103 379.8 274 74.1
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.1e-103 379.8 274 74.1
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 3.6e-103 379.0 272 71.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 3.6e-103 379.0 242 79.3
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 3.6e-103 379.0 231 81.4
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.8e-102 376.7 269 75.1
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 5.1e-102 375.2 249 76.7
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 5.1e-102 375.2 271 71.2
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 5.1e-102 375.2 288 70.8
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 8.8e-102 374.4 284 71.5
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 3.3e-101 372.5 267 72.7
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.7e-101 370.9 261 72.8
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 1.3e-100 370.5 248 76.2
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 1.7e-100 370.2 259 74.5
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 1.7e-100 370.2 272 72.8
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 2.2e-100 369.8 233 80.3
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 4.8e-100 368.6 274 71.9
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 4.8e-100 368.6 252 74.6
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 6.3e-100 368.2 274 71.9
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 6.3e-100 368.2 274 72.3
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 6.3e-100 368.2 290 68.3
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.4e-99 367.1 237 78.5
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 2.4e-99 366.3 266 72.6
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 5.3e-99 365.2 269 70.6
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 9.1e-99 364.4 281 70.5
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.2e-98 364.0 275 71.6
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.5e-98 363.6 241 76.8
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.0e-98 363.2 292 67.8
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 5.9e-98 361.7 240 77.1
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 5.9e-98 361.7 244 75.0
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 7.7e-98 361.3 260 70.8
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 2.2e-97 359.8 242 76.0
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.2e-97 359.8 264 71.6
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 2.9e-97 359.4 268 70.9
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 5.0e-97 358.6 265 69.4
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 8.5e-97 357.8 244 75.4
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-96 356.7 250 73.6
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.2e-96 355.9 255 72.5
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 3.2e-96 355.9 233 76.8
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 4.2e-96 355.5 252 72.2
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 4.2e-96 355.5 247 74.1
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.6e-95 353.6 243 74.5
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 1.6e-95 353.6 244 73.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 2.1e-95 353.2 251 72.9
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.7e-95 352.8 276 69.6
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 3.6e-95 352.4 249 73.9
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 3.6e-95 352.4 232 73.7
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 4.7e-95 352.1 251 72.5
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.0e-94 350.9 225 78.2
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.0e-94 350.9 263 68.4
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.4e-94 350.5 236 75.0
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.8e-94 350.1 238 75.6
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.1e-94 348.6 266 68.8
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 6.7e-94 348.2 263 68.1
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.7e-94 348.2 266 68.8
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.5e-93 347.1 258 69.4
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.3e-93 345.9 266 69.5
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 5.7e-93 345.1 244 74.6
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 5.7e-93 345.1 283 66.8
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 5.7e-93 345.1 239 72.4
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 7.4e-93 344.7 236 74.6
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.7e-92 343.6 233 72.5
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.8e-92 342.8 274 67.9
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.7e-92 342.4 277 64.6
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 3.7e-92 342.4 270 66.7
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.4e-91 340.5 271 66.8
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.4e-91 340.5 241 71.4
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 2.4e-91 339.7 240 72.5
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.1e-91 339.3 326 61.7
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 3.8e-89 332.4 286 64.3
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 5.0e-89 332.0 255 65.9
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.9e-88 330.1 283 63.3
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 9.4e-88 327.8 235 72.8
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 8.0e-87 324.7 283 61.8
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.8e-86 323.6 283 62.5
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.5e-85 320.5 240 69.2
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 5.7e-85 318.5 272 60.7
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.4e-83 313.9 278 61.2
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 3.1e-83 312.8 250 67.2
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 3.8e-81 305.8 231 69.3
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.1e-80 304.3 279 60.6
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.9e-80 303.5 281 60.1
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.5e-80 303.1 285 57.5
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.4e-78 297.4 289 57.1
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 6.3e-76 288.5 284 57.4
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.0e-74 283.5 213 66.2
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 4.2e-72 275.8 231 64.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.2e-71 274.2 246 58.1
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.1e-71 273.5 205 69.3
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 3.6e-71 272.7 247 57.1
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 6.1e-71 271.9 229 64.6
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-70 270.8 240 61.2
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 6.8e-70 268.5 260 58.5
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.1e-67 259.2 214 61.7
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 2.9e-65 253.1 213 59.6
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 8.6e-65 251.5 195 71.3
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 9.5e-64 248.1 233 54.1
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.6e-63 246.1 207 60.4
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.6e-63 246.1 209 60.3
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-61 240.7 207 62.8
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 2.2e-60 236.9 190 69.5
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 3.7e-60 236.1 219 61.2
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.1e-59 234.6 212 56.6
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 4.1e-59 232.6 188 67.6
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.9e-57 226.1 165 69.7
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.1e-56 224.6 197 62.4
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.3e-56 222.6 167 67.1
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.1e-38 163.3 118 68.6
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.5e-34 149.8 186 48.4
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 5.1e-33 146.0 258 38.8
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.9e-32 144.1 214 40.7
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-30 137.9 149 51.0
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 7.1e-27 125.6 208 33.7
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.8e-22 110.9 65 80.0
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 9.9e-21 105.1 70 67.1
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.2e-20 104.0 82 59.8
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 7.3e-16 89.0 49 85.7
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 2.8e-15 87.0 81 64.2
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 6.9e-14 82.4 134 47.0
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.5e-13 81.3 46 84.8
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.2e-10 71.6 38 89.5
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.6e-10 71.2 107 42.1
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 2.1e-10 70.9 70 60.0
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 6.0e-10 69.3 45 80.0
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.3e-07 61.6 48 58.3


User provided reference genes

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