Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 1.4e-159 566.2 283 100.0
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 9.6e-153 543.5 277 97.8
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 8.1e-152 540.4 277 97.5
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 1.4e-151 539.7 277 97.1
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.7e-139 498.8 277 89.2
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 6.0e-139 497.7 277 88.8
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.8e-138 496.1 277 88.4
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 5.1e-138 494.6 276 88.4
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 8.7e-138 493.8 277 88.1
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 1.1e-137 493.4 276 87.3
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 2.5e-137 492.3 276 88.4
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 3.3e-137 491.9 278 86.7
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 5.7e-137 491.1 276 88.4
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 9.7e-137 490.3 277 86.6
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 1.6e-136 489.6 277 87.0
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 3.7e-136 488.4 281 85.1
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 3.7e-136 488.4 277 88.1
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 3.7e-136 488.4 278 86.3
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 4.8e-136 488.0 278 86.0
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 2.0e-134 482.6 277 86.3
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 3.4e-134 481.9 277 86.6
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 4.5e-134 481.5 277 85.2
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 4.5e-134 481.5 277 85.6
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 5.9e-134 481.1 277 85.6
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.0e-133 480.3 278 84.2
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 1.0e-133 480.3 278 84.2
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 1.3e-133 479.9 275 86.2
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.7e-133 479.6 278 84.2
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 3.8e-133 478.4 275 85.5
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 5.0e-133 478.0 277 84.1
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 6.5e-133 477.6 277 84.8
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 1.1e-132 476.9 277 83.8
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 1.1e-132 476.9 277 84.1
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.4e-132 476.5 276 84.4
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.4e-132 476.5 277 85.2
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 7.2e-132 474.2 274 85.4
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 9.3e-132 473.8 274 85.0
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 9.3e-132 473.8 274 85.0
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 1.2e-131 473.4 277 84.5
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 1.2e-131 473.4 274 85.8
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 2.1e-131 472.6 277 84.5
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 3.6e-131 471.9 277 85.6
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 4.6e-131 471.5 277 84.1
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 4.6e-131 471.5 277 84.8
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 6.1e-131 471.1 277 83.4
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 6.1e-131 471.1 277 84.1
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 1.0e-130 470.3 277 82.7
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 1.3e-130 469.9 274 83.9
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 1.8e-130 469.5 277 82.7
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.8e-130 469.5 277 83.0
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 1.8e-130 469.5 277 82.7
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 3.9e-130 468.4 278 82.4
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 5.1e-130 468.0 278 82.4
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 6.7e-130 467.6 277 83.0
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 6.7e-130 467.6 277 83.0
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 8.7e-130 467.2 277 84.1
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.1e-129 466.8 278 83.1
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 1.5e-129 466.5 277 83.0
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 5.7e-129 464.5 278 80.9
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 7.4e-129 464.2 278 81.7
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 7.4e-129 464.2 277 82.7
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 1.3e-128 463.4 277 82.7
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 1.7e-128 463.0 277 81.9
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 1.7e-128 463.0 277 81.6
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 2.2e-128 462.6 277 81.2
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 3.7e-128 461.8 277 81.2
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 4.8e-128 461.5 277 81.2
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 8.2e-128 460.7 278 80.2
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 1.4e-127 459.9 278 80.9
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 2.4e-127 459.1 278 81.7
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 3.1e-127 458.8 277 82.3
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 3.1e-127 458.8 278 80.2
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 4.1e-127 458.4 278 80.6
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 4.1e-127 458.4 278 80.2
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 5.3e-127 458.0 277 81.2
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 9.1e-127 457.2 277 81.6
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 1.2e-126 456.8 278 80.6
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.2e-126 456.8 278 81.3
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 1.2e-126 456.8 267 84.6
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 1.2e-126 456.8 277 81.6
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 2.0e-126 456.1 278 80.2
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 2.0e-126 456.1 276 81.5
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 2.6e-126 455.7 275 80.7
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 3.4e-126 455.3 277 81.2
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 4.5e-126 454.9 278 80.6
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 4.5e-126 454.9 278 80.6
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 7.7e-126 454.1 276 80.4
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 7.7e-126 454.1 276 80.4
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 1.0e-125 453.8 278 80.9
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 1.3e-125 453.4 278 80.2
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 5.0e-125 451.4 277 79.4
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 2.5e-124 449.1 277 79.8
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 2.5e-124 449.1 276 79.7
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 3.2e-124 448.7 277 80.1
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 7.2e-124 447.6 277 78.3
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 4.7e-123 444.9 277 80.1
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 4.7e-123 444.9 277 81.6
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 6.1e-123 444.5 276 77.9
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 3.9e-122 441.8 325 70.2
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 8.8e-122 440.7 275 78.2
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 1.3e-120 436.8 276 77.5
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 1.3e-120 436.8 276 79.7
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 2.8e-120 435.6 276 76.8
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 3.8e-117 425.2 276 76.4
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 5.0e-117 424.9 277 77.3
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 1.8e-114 416.4 410 56.6
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 3.3e-113 412.1 276 72.5
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 1.0e-106 390.6 275 70.9
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 1.4e-106 390.2 274 69.7
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 5.2e-106 388.3 246 77.6
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 3.5e-102 375.6 274 67.2
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.5e-102 375.2 274 67.2
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 7.7e-102 374.4 281 70.1
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.0e-101 374.0 273 67.0
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 3.8e-101 372.1 274 67.2
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 2.5e-100 369.4 274 66.1
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 6.8e-98 361.3 278 63.3
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 5.9e-94 348.2 276 63.0
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 3.8e-93 345.5 274 63.1
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 5.2e-90 335.1 277 61.0
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 5.7e-89 331.6 207 78.3
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.1e-87 325.5 235 68.5
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 8.0e-83 311.2 277 58.1
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 1.5e-81 307.0 278 60.8
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 2.0e-78 296.6 276 55.4
Cpa.g.sc2302.1 Carica papaya HOM05D004510 ORTHO05D005302 3.7e-64 249.2 143 86.7
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 1.5e-60 237.3 155 76.8
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 3.1e-58 229.6 134 83.6
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 1.7e-53 213.8 277 41.2
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 1.1e-52 211.1 292 42.1
RcHm_v2.0_Chr5g0044471 Rosa chinensis HOM05D004510 ORTHO05D005302 4.0e-42 176.0 108 81.5
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 9.3e-39 164.9 96 83.3
CSS0032823 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D005302 2.1e-22 110.5 80 70.0
BcaB01g01177 Brassica carinata HOM05D004510 ORTHO05D005302 4.3e-20 102.8 82 61.0
Pp3c2_38440 Physcomitrium patens HOM05D004510 ORTHO05D005302 6.7e-13 79.0 100 46.0
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 2.8e-11 73.6 43 81.4
Pp3c17_10 Physcomitrium patens HOM05D004510 ORTHO05D005302 3.7e-11 73.2 95 45.3
Pp3c23_90 Physcomitrium patens HOM05D004510 ORTHO05D005302 3.7e-11 73.2 95 45.3
Pp3c26_15780 Physcomitrium patens HOM05D004510 ORTHO05D005302 6.3e-11 72.4 101 43.6
Cre09.g392504 Chlamydomonas reinhardtii HOM05D004510 ORTHO05D005302 3.6e-06 56.6 60 38.3


User provided reference genes

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