Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 0.0e+00 1533.9 804 100.0
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 0.0e+00 1208.0 802 78.8
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 0.0e+00 1155.2 822 76.6
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1151.3 821 74.7
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 0.0e+00 1126.3 823 73.3
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1110.1 821 73.7
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 0.0e+00 1108.2 821 72.5
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 0.0e+00 1100.1 821 71.5
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1090.9 815 71.2
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1083.6 815 72.1
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1077.0 815 72.1
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1076.6 815 72.0
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 5.5e-312 1073.9 812 70.2
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.9e-308 1061.2 813 69.1
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 6.2e-306 1053.9 812 69.5
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 4.9e-303 1044.3 832 69.5
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 5.4e-302 1040.8 822 69.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 7.1e-302 1040.4 815 68.2
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 7.9e-301 1036.9 821 68.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 3.9e-300 1034.6 812 68.0
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 8.1e-298 1026.9 817 66.5
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.4e-297 1025.4 830 68.7
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.5e-296 1022.7 813 67.4
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.1e-294 1016.5 824 65.8
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.4e-294 1016.1 785 70.7
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.2e-294 1015.0 809 69.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.2e-293 1013.1 831 65.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.7e-293 1011.9 724 72.9
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.5e-293 1011.5 832 65.0
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 4.6e-293 1011.1 819 67.9
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.3e-292 1008.8 807 67.3
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 4.3e-291 1004.6 817 66.3
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 9.6e-291 1003.4 820 66.2
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.4e-289 999.6 816 66.4
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.6e-288 995.3 821 66.4
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 7.1e-286 987.3 859 63.6
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.7e-284 980.3 812 65.8
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.6e-280 968.8 818 67.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 9.4e-278 960.3 823 64.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.7e-277 958.7 840 64.8
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.1e-277 957.6 854 63.8
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 6.7e-276 954.1 823 64.4
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.5e-275 953.0 823 64.3
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 2.5e-275 952.2 819 63.2
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.0e-272 942.6 823 66.5
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 7.9e-269 930.6 817 62.1
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 4.4e-267 924.9 722 69.7
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 2.0e-264 916.0 836 62.0
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 4.5e-264 914.8 818 63.3
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.1e-259 900.2 872 58.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.7e-258 895.2 823 60.4
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.8e-257 892.9 887 57.9
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.8e-257 892.9 832 60.2
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.2e-256 890.2 823 60.3
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.9e-256 887.9 842 60.6
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.2e-253 880.2 870 57.0
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 4.7e-253 878.2 830 60.8
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.5e-251 873.2 816 60.3
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.6e-248 863.2 827 59.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.0e-247 860.5 816 59.9
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.9e-247 859.0 913 56.2
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.5e-246 855.9 769 61.5
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 4.2e-246 855.1 823 58.9
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 3.0e-244 849.0 943 55.1
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 4.4e-243 845.1 842 58.6
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 4.8e-242 841.6 983 52.5
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 6.3e-242 841.3 817 60.6
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.2e-240 837.0 807 58.9
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.0e-240 836.3 920 55.2
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.0e-239 833.9 828 57.7
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.1e-238 830.5 939 54.2
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 9.5e-238 827.4 829 57.1
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 6.1e-237 824.7 842 57.1
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 7.5e-235 817.8 685 67.0
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.7e-234 815.5 812 58.4
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 7.8e-232 807.7 830 56.6
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 2.3e-231 806.2 924 53.8
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 8.6e-231 804.3 825 57.7
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 5.6e-230 801.6 818 56.5
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 5.2e-228 795.0 909 55.7
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 6.8e-228 794.7 900 55.4
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 4.4e-227 792.0 918 55.1
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.4e-225 786.9 904 55.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 4.1e-225 785.4 931 52.5
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.9e-223 778.9 542 74.5
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 6.6e-223 778.1 465 84.1
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 6.0e-216 755.0 820 57.4
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.7e-215 753.4 559 69.8
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.1e-214 750.7 823 53.7
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.5e-214 750.4 820 55.1
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.5e-214 750.4 1050 47.0
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 3.4e-211 739.2 783 57.2
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 7.1e-209 731.5 755 55.8
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.7e-208 729.6 824 52.9
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.0e-207 727.6 633 66.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.3e-207 727.2 822 52.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 3.3e-206 722.6 907 52.0
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.6e-206 721.8 819 52.7
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 9.9e-203 711.1 807 54.6
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.9e-202 709.5 907 50.9
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.2e-201 706.1 798 56.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 3.5e-200 702.6 799 51.8
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 4.3e-198 695.7 820 52.0
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 4.0e-196 689.1 834 51.7
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 7.8e-192 674.9 829 50.9
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.1e-189 666.8 816 52.6
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.6e-184 650.6 412 78.2
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 6.7e-183 645.2 385 81.8
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 7.1e-177 625.2 1113 41.1
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.4e-172 610.1 355 82.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.0e-167 593.2 342 83.9
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 2.5e-166 590.1 355 80.6
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.1e-164 583.2 669 52.9
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.9e-161 573.9 804 47.3
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.4e-159 567.8 446 66.6
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 8.2e-157 558.5 361 75.6
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 3.8e-154 549.7 405 67.9
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.9e-153 547.4 380 72.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.8e-151 540.8 412 68.9
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 9.1e-148 528.5 343 73.8
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.9e-145 520.8 610 51.1
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 7.2e-145 518.8 377 69.8
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 9.4e-145 518.5 508 55.9
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 5.0e-138 496.1 355 68.2
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 7.2e-137 492.3 368 69.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.2e-136 491.5 382 63.9
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.8e-135 487.6 652 47.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.1e-129 468.4 322 73.3
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 2.3e-127 460.7 296 77.0
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 5.4e-124 449.5 406 59.6
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.3e-122 444.9 497 49.3
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.3e-119 434.1 540 47.6
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 3.0e-119 433.7 470 56.4
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 7.5e-118 429.1 274 77.7
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.3e-117 428.3 439 50.6
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.7e-117 426.8 676 41.3
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 7.5e-110 402.5 518 46.3
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 9.8e-110 402.1 241 83.0
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 7.0e-108 396.0 456 53.3
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 9.2e-108 395.6 571 54.6
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.5e-105 388.3 466 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 3.3e-105 387.1 459 49.5
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.2e-102 378.6 188 98.9
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 2.0e-102 377.9 366 60.7
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.1e-97 362.1 478 53.8
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-91 342.0 354 60.5
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 7.8e-91 339.3 463 48.4
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.1e-89 335.5 463 45.6
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.2e-86 325.5 602 38.0
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 2.9e-85 320.9 474 44.9
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.8e-78 296.6 268 59.3
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 8.4e-77 292.7 319 47.3
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 3.5e-75 287.3 197 71.6
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 2.4e-71 274.6 414 47.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.5e-70 270.4 182 74.7
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.8e-69 267.3 475 43.4
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 3.4e-62 244.2 445 36.2
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.3e-61 242.3 347 38.6
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 4.2e-60 237.3 185 66.5
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 5.1e-58 230.3 183 66.1
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.3e-57 227.6 152 74.3
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 7.2e-52 209.9 471 39.7
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.6e-48 198.7 459 33.8
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 6.3e-48 196.8 392 34.2
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.4e-46 191.0 148 62.8
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 7.7e-46 189.9 101 90.1
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 3.2e-36 157.9 85 84.7
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.2e-29 135.2 217 43.3
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 6.7e-26 123.6 216 40.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-23 116.3 128 57.0
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.1e-23 114.8 64 84.4
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 2.0e-22 112.1 65 81.5
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-21 109.4 66 78.8
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.0e-19 100.1 58 77.6
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.8e-18 99.0 65 72.3
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-11 76.3 39 94.9
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.6e-11 75.9 59 64.4
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 8.0e-11 73.6 52 69.2
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.3e-10 72.0 47 76.6
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.7e-09 67.4 41 85.4
HanXRQChr11g0344511 Helianthus annuus HOM05D003684 ORTHO05D004428 2.0e-06 58.9 33 75.8


User provided reference genes

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