Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 3.6e-55 218.0 109 100.0
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.3e-43 177.6 103 83.5
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 8.5e-41 170.2 103 79.6
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.5e-40 169.5 103 78.6
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 2.5e-40 168.7 103 78.6
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.5e-40 168.7 103 77.7
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 4.2e-40 167.9 103 77.7
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 5.5e-40 167.5 103 76.7
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.2e-39 166.4 103 74.8
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.2e-39 166.4 103 77.7
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.6e-39 166.0 103 73.8
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-39 166.0 103 76.7
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.6e-39 166.0 103 76.7
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.1e-39 165.6 103 75.7
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.7e-39 165.2 103 75.7
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.7e-39 165.2 103 74.8
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.6e-39 164.9 103 73.8
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.7e-39 164.5 103 76.7
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.7e-39 164.5 103 76.7
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 6.1e-39 164.1 103 74.8
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 6.1e-39 164.1 103 75.7
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.0e-39 163.7 103 74.8
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 8.0e-39 163.7 103 77.7
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.0e-38 163.3 103 73.8
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 1.4e-38 162.9 103 72.8
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.4e-38 162.9 103 76.7
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.4e-38 162.9 103 73.8
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.8e-38 162.5 103 73.8
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.8e-38 162.5 103 76.7
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.8e-38 162.5 103 71.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.8e-38 162.5 103 74.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.3e-38 162.2 103 73.8
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.2e-38 161.0 103 72.8
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 5.2e-38 161.0 103 74.8
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 6.7e-38 160.6 102 76.5
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 6.7e-38 160.6 103 74.8
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 8.8e-38 160.2 103 74.8
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 8.8e-38 160.2 103 73.8
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.8e-38 160.2 103 73.8
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 8.8e-38 160.2 103 72.8
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.0e-37 159.1 103 71.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 2.6e-37 158.7 103 72.8
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.7e-37 157.5 103 70.9
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 5.7e-37 157.5 103 69.9
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 7.5e-37 157.1 103 70.9
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 7.5e-37 157.1 103 71.8
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 9.7e-37 156.8 103 71.8
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.3e-36 156.4 103 70.9
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.7e-36 156.0 103 68.9
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.7e-36 156.0 103 70.9
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.7e-36 156.0 103 69.9
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.2e-36 155.6 103 69.9
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 2.8e-36 155.2 103 71.8
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.8e-36 155.2 103 71.8
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 2.8e-36 155.2 103 69.9
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 2.8e-36 155.2 98 77.6
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 3.7e-36 154.8 103 68.9
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 3.7e-36 154.8 103 69.9
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 4.8e-36 154.5 103 71.8
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 8.2e-36 153.7 103 68.0
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 8.2e-36 153.7 103 68.0
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.8e-35 152.5 103 71.8
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 2.4e-35 152.1 103 70.9
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 3.1e-35 151.8 103 68.0
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 3.1e-35 151.8 103 68.9
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 4.1e-35 151.4 103 68.0
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 4.1e-35 151.4 103 68.0
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 5.3e-35 151.0 103 67.0
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.3e-35 151.0 103 69.9
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 7.0e-35 150.6 103 64.1
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 7.0e-35 150.6 103 68.9
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.2e-34 149.8 103 68.9
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.6e-34 149.4 103 67.0
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 1.6e-34 149.4 103 68.0
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.6e-34 149.4 102 69.6
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.0e-34 149.1 104 69.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.0e-34 149.1 104 69.2
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.7e-34 148.7 103 68.9
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 2.7e-34 148.7 103 67.0
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.7e-34 148.7 103 66.0
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.5e-34 148.3 103 68.9
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 3.5e-34 148.3 103 68.9
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 4.5e-34 147.9 103 68.9
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 5.9e-34 147.5 103 68.9
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.0e-33 146.7 103 68.0
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.0e-33 146.7 122 59.0
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.3e-33 146.4 103 67.0
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.7e-33 146.0 104 68.3
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.7e-33 146.0 104 68.3
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.7e-33 146.0 103 67.0
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.7e-33 146.0 104 68.3
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.2e-33 145.6 104 68.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.9e-33 145.2 96 71.9
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 8.5e-33 143.7 104 67.3
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.5e-33 143.7 104 67.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 8.5e-33 143.7 105 61.9
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.1e-32 143.3 103 68.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.1e-32 143.3 100 69.0
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-32 142.5 103 64.1
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.9e-32 142.5 96 69.8
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.5e-32 142.1 103 64.1
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.5e-32 142.1 103 64.1
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.2e-32 141.7 103 64.1
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.2e-32 140.6 103 68.9
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 7.2e-32 140.6 103 64.1
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 9.4e-32 140.2 98 68.4
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-31 139.4 103 69.9
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.8e-30 136.0 104 63.5
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 3.0e-30 135.2 104 57.7
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 4.0e-30 134.8 104 58.7
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 4.0e-30 134.8 88 73.9
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.2e-30 134.4 101 65.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 8.8e-30 133.7 104 59.6
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 8.8e-30 133.7 104 59.6
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.2e-29 133.3 104 59.6
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.2e-29 133.3 98 64.3
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.0e-29 132.5 103 61.2
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 3.4e-29 131.7 104 59.6
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 4.4e-29 131.3 103 62.1
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 5.7e-29 131.0 104 58.7
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 9.8e-29 130.2 107 60.7
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.3e-28 129.8 138 50.0
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.7e-28 129.4 103 62.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 6.3e-28 127.5 104 57.7
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 8.3e-28 127.1 104 59.6
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.9e-26 120.9 113 58.4
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 7.7e-26 120.6 103 59.2
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.6e-23 112.8 103 54.4
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 3.6e-23 111.7 103 52.4
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.1e-19 100.1 98 45.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.9e-16 89.4 103 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.1e-15 85.9 103 40.8
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 2.0e-13 79.3 104 40.4
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.6e-13 79.0 56 62.5
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.5e-13 77.4 58 60.3
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.5e-13 77.4 58 60.3
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 7.5e-13 77.4 50 70.0
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 7.8e-10 67.4 102 34.3
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.2e-07 60.1 105 33.3


User provided reference genes

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