Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022339m.g Citrus clementina HOM05D000156 ORTHO05D004238 4.9e-79 298.1 199 100.0
Atru.chr4.1432 Acer truncatum HOM05D000156 ORTHO05D004238 1.4e-54 216.9 170 92.9
Gorai.011G135300 Gossypium raimondii HOM05D000156 ORTHO05D004238 9.1e-49 197.6 170 82.4
Gohir.D10G122800 Gossypium hirsutum HOM05D000156 ORTHO05D004238 3.5e-48 195.7 170 84.1
Gohir.A10G144200 Gossypium hirsutum HOM05D000156 ORTHO05D004238 1.7e-47 193.4 170 81.8
TWI38G2046 Tripterygium wilfordii HOM05D000156 ORTHO05D004238 2.2e-47 193.0 173 86.1
Duzib212G0624 Durio zibethinus HOM05D000156 ORTHO05D004238 5.0e-47 191.8 174 81.0
Haze_01355 Corylus avellana HOM05D000156 ORTHO05D004238 9.4e-46 187.6 174 77.0
Thecc.04G165000 Theobroma cacao HOM05D000156 ORTHO05D004238 2.1e-45 186.4 179 82.7
Cfa015272 Carpinus fangiana HOM05D000156 ORTHO05D004238 6.1e-45 184.9 175 77.7
QL10p055952 Quercus lobata HOM05D000156 ORTHO05D004238 1.0e-44 184.1 174 79.9
Potri.013G127200 Populus trichocarpa HOM05D000156 ORTHO05D004238 1.4e-44 183.7 173 79.2
Potri.019G095700 Populus trichocarpa HOM05D000156 ORTHO05D004238 2.3e-44 183.0 173 81.5
Cpa.g.sc9.371 Carica papaya HOM05D000156 ORTHO05D004238 3.3e-43 179.1 184 81.5
Duzib151G1125 Durio zibethinus HOM05D000156 ORTHO05D004238 3.3e-43 179.1 196 73.0
Manes.04G035000 Manihot esculenta HOM05D000156 ORTHO05D004238 1.3e-42 177.2 174 79.9
Gohir.A09G213604 Gossypium hirsutum HOM05D000156 ORTHO05D004238 1.8e-41 173.3 185 74.6
COL.COLO4_23454 Corchorus olitorius HOM05D000156 ORTHO05D004238 1.2e-40 170.6 182 70.9
Gorai.006G231900 Gossypium raimondii HOM05D000156 ORTHO05D004238 1.2e-40 170.6 188 71.3
Gohir.D09G212100 Gossypium hirsutum HOM05D000156 ORTHO05D004238 1.6e-40 170.2 185 71.9
TWI15G1140 Tripterygium wilfordii HOM05D000156 ORTHO05D004238 5.9e-40 168.3 180 81.7
Manes.11G128700 Manihot esculenta HOM05D000156 ORTHO05D004238 3.8e-39 165.6 172 79.1
Prupe.1G207600 Prunus persica HOM05D000156 ORTHO05D004238 6.5e-39 164.9 174 77.0
Sabra19G0108400 Salix brachista HOM05D000156 ORTHO05D004238 8.5e-39 164.5 225 64.4
Ca_18635_v3 Cicer arietinum L. HOM05D000156 ORTHO05D004238 2.5e-38 162.9 174 71.8
Ca_29980_v3 Cicer arietinum L. HOM05D000156 ORTHO05D004238 2.5e-38 162.9 174 71.8
Eucgr.H00308 Eucalyptus grandis HOM05D000156 ORTHO05D004238 2.7e-37 159.5 173 72.8
arahy.Tifrunner.gnm1.ann1.J580FK Arachis hypogaea HOM05D000156 ORTHO05D004238 6.1e-37 158.3 175 72.0
arahy.Tifrunner.gnm1.ann1.ZE7QP6 Arachis hypogaea HOM05D000156 ORTHO05D004238 6.1e-37 158.3 175 72.0
FvH4_4g10360 Fragaria vesca HOM05D000156 ORTHO05D004238 8.0e-37 157.9 173 76.3
FAN12G2486 Fragaria x ananassa HOM05D000156 ORTHO05D004238 8.0e-37 157.9 173 76.3
FAN12G3396 Fragaria x ananassa HOM05D000156 ORTHO05D004238 8.0e-37 157.9 173 76.3
Medtr4g087420 Medicago truncatula HOM05D000156 ORTHO05D004238 3.0e-36 156.0 173 71.7
Dinv07055 Davidia involucrata HOM05D000156 ORTHO05D004238 5.2e-36 155.2 173 68.2
Lalb_Chr09g0328081 Lupinus albus HOM05D000156 ORTHO05D004238 1.2e-35 154.1 174 63.2
RcHm_v2.0_Chr4g0405911 Rosa chinensis HOM05D000156 ORTHO05D004238 1.2e-35 154.1 174 72.4
CiPaw.02G100100 Carya illinoinensis HOM05D000156 ORTHO05D004238 2.0e-35 153.3 193 72.0
Lj4g0024938 Lotus japonicus HOM05D000156 ORTHO05D004238 2.6e-35 152.9 175 70.9
TPR.G23525 Trifolium pratense HOM05D000156 ORTHO05D004238 2.6e-35 152.9 173 72.3
Gohir.D02G009900 Gossypium hirsutum HOM05D000156 ORTHO05D004238 2.8e-34 149.4 174 75.9
Glyma.02G138000 Glycine max HOM05D000156 ORTHO05D004238 6.3e-34 148.3 174 71.3
MD13G1257200 Malus domestica HOM05D000156 ORTHO05D004238 8.3e-34 147.9 172 74.4
Psat7g119920 Pisum sativum HOM05D000156 ORTHO05D004238 1.1e-33 147.5 173 71.7
Dinv33210 Davidia involucrata HOM05D000156 ORTHO05D004238 1.4e-33 147.1 178 76.4
FAN17G1103 Fragaria x ananassa HOM05D000156 ORTHO05D004238 1.4e-33 147.1 173 75.7
Gorai.005G012200 Gossypium raimondii HOM05D000156 ORTHO05D004238 1.4e-33 147.1 174 75.3
Rhsim02G0084500 Rhododendron simsii HOM05D000156 ORTHO05D004238 1.4e-33 147.1 173 67.1
Gohir.A02G009700 Gossypium hirsutum HOM05D000156 ORTHO05D004238 1.8e-33 146.7 174 75.3
MD04G1049400 Malus domestica HOM05D000156 ORTHO05D004238 1.8e-33 146.7 199 68.8
Phvul.003G297100 Phaseolus vulgaris HOM05D000156 ORTHO05D004238 1.8e-33 146.7 174 69.0
Actinidia28978 Actinidia chinensis HOM05D000156 ORTHO05D004238 3.1e-33 146.0 170 64.7
VMungo0251G3401 Vigna mungo HOM05D000156 ORTHO05D004238 4.1e-33 145.6 174 69.0
Lalb_Chr16g0384401 Lupinus albus HOM05D000156 ORTHO05D004238 9.1e-33 144.4 174 61.5
FAN22G1607 Fragaria x ananassa HOM05D000156 ORTHO05D004238 1.2e-32 144.1 178 74.7
PGR042G2030 Punica granatum HOM05D000156 ORTHO05D004238 1.6e-32 143.7 184 66.8
CSS0012741 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D004238 2.0e-32 143.3 180 72.2
THA.LOC104804046 Tarenaya hassleriana HOM05D000156 ORTHO05D004238 2.0e-32 143.3 185 71.4
Glyma.07G207300 Glycine max HOM05D000156 ORTHO05D004238 2.7e-32 142.9 174 70.1
Lalb_Chr05g0218871 Lupinus albus HOM05D000156 ORTHO05D004238 3.8e-31 139.0 171 67.3
Ah.13g073440 Amaranthus hybridus HOM05D000156 ORTHO05D004238 1.1e-30 137.5 175 48.6
AL4G42500 Arabidopsis lyrata HOM05D000156 ORTHO05D004238 3.2e-30 136.0 106 71.7
Nitab4.5_0000013g0510 Nicotiana tabacum HOM05D000156 ORTHO05D004238 4.2e-30 135.6 175 60.6
Aa31LG1G25390 Aethionema arabicum HOM05D000156 ORTHO05D004238 7.2e-30 134.8 85 78.8
AT2G43680 Arabidopsis thaliana HOM05D000156 ORTHO05D004238 7.2e-30 134.8 94 76.6
Hma1.2p1_2797F.1_g328710 Hydrangea macrophylla HOM05D000156 ORTHO05D004238 7.2e-30 134.8 176 62.5
Sp4g25760 Schrenkiella parvula HOM05D000156 ORTHO05D004238 7.2e-30 134.8 84 76.2
Carub.0005s2641 Capsella rubella HOM05D000156 ORTHO05D004238 1.6e-29 133.7 193 58.5
MELO3C022423.2 Cucumis melo HOM05D000156 ORTHO05D004238 1.6e-29 133.7 172 50.6
AT3G59690 Arabidopsis thaliana HOM05D000156 ORTHO05D004238 3.6e-29 132.5 183 63.4
Thhalv10001347m.g Eutrema salsugineum HOM05D000156 ORTHO05D004238 4.7e-29 132.1 103 70.9
Actinidia27116 Actinidia chinensis HOM05D000156 ORTHO05D004238 6.1e-29 131.7 196 64.3
GSVIVG01038148001 Vitis vinifera HOM05D000156 ORTHO05D004238 6.1e-29 131.7 175 66.3
Sabra13G0106200 Salix brachista HOM05D000156 ORTHO05D004238 1.4e-28 130.6 147 72.1
Peaxi162Scf00075g01322 Petunia axillaris HOM05D000156 ORTHO05D004238 1.8e-28 130.2 189 65.6
CsaV3_6G007060 Cucumis sativus L. HOM05D000156 ORTHO05D004238 4.0e-28 129.0 173 56.6
Hund03206 Selenicereus undatus HOM05D000156 ORTHO05D004238 4.0e-28 129.0 206 54.9
C04p70680 Brassica napus HOM05D000156 ORTHO05D004238 5.2e-28 128.6 88 71.6
Carub.0004s2622 Capsella rubella HOM05D000156 ORTHO05D004238 6.8e-28 128.3 102 69.6
ECA248G3323 Erigeron canadensis HOM05D000156 ORTHO05D004238 8.8e-28 127.9 174 64.9
CAN.G759.6 Capsicum annuum HOM05D000156 ORTHO05D004238 1.5e-27 127.1 186 69.9
PGSC0003DMG400016053 Solanum tuberosum HOM05D000156 ORTHO05D004238 2.6e-27 126.3 180 70.0
DCAR_027520 Daucus carota HOM05D000156 ORTHO05D004238 3.4e-27 125.9 178 69.1
Oeu016618.1 Olea europaea HOM05D000156 ORTHO05D004238 3.4e-27 125.9 180 67.8
vmacro00693 Vaccinium macrocarpon HOM05D000156 ORTHO05D004238 3.4e-27 125.9 191 65.4
Solyc08g014280.3 Solanum lycopersicum HOM05D000156 ORTHO05D004238 7.5e-27 124.8 180 70.0
Sopen08g005190 Solanum pennellii HOM05D000156 ORTHO05D004238 7.5e-27 124.8 180 70.0
CARHR138870 Cardamine hirsuta HOM05D000156 ORTHO05D004238 9.8e-27 124.4 90 73.3
AUR62023786 Chenopodium quinoa HOM05D000156 ORTHO05D004238 9.8e-27 124.4 210 47.6
A04p32990 Brassica napus HOM05D000156 ORTHO05D004238 1.3e-26 124.0 85 75.3
AUR62002397 Chenopodium quinoa HOM05D000156 ORTHO05D004238 1.3e-26 124.0 211 47.9
Sed0019824 Sechium edule HOM05D000156 ORTHO05D004238 1.3e-26 124.0 173 53.2
BraA09t40634Z Brassica rapa HOM05D000156 ORTHO05D004238 1.7e-26 123.6 178 61.2
Peaxi162Scf00483g00513 Petunia axillaris HOM05D000156 ORTHO05D004238 1.7e-26 123.6 206 56.3
Sp5g03490 Schrenkiella parvula HOM05D000156 ORTHO05D004238 1.7e-26 123.6 183 61.2
Nitab4.5_0003911g0030 Nicotiana tabacum HOM05D000156 ORTHO05D004238 2.2e-26 123.2 190 65.3
BcaB01g03368 Brassica carinata HOM05D000156 ORTHO05D004238 2.8e-26 122.9 108 62.0
HanXRQChr01g0023281 Helianthus annuus HOM05D000156 ORTHO05D004238 2.8e-26 122.9 171 64.9
Hund12379 Selenicereus undatus HOM05D000156 ORTHO05D004238 2.8e-26 122.9 184 44.6
Cc03_g14180 Coffea canephora HOM05D000156 ORTHO05D004238 4.9e-26 122.1 185 68.6
ClCG06G001120 Citrullus lanatus HOM05D000156 ORTHO05D004238 8.3e-26 121.3 172 52.3
Thhalv10005903m.g Eutrema salsugineum HOM05D000156 ORTHO05D004238 1.1e-25 120.9 191 58.1
MSTRG.9731 Avicennia marina HOM05D000156 ORTHO05D004238 1.4e-25 120.6 195 57.9
TAR362G0151 Trochodendron aralioides HOM05D000156 ORTHO05D004238 1.8e-25 120.2 92 68.5
A09p52010 Brassica napus HOM05D000156 ORTHO05D004238 2.4e-25 119.8 178 60.7
EL10Ac3g06097 Beta vulgaris HOM05D000156 ORTHO05D004238 3.1e-25 119.4 212 50.9
C08p34690 Brassica napus HOM05D000156 ORTHO05D004238 4.1e-25 119.0 178 60.1
BcaC01g05221 Brassica carinata HOM05D000156 ORTHO05D004238 5.4e-25 118.6 97 64.9
SGA_v2.0_scaffold283G46954 Striga asiatica HOM05D000156 ORTHO05D004238 5.4e-25 118.6 181 45.3
TAR633G1731 Trochodendron aralioides HOM05D000156 ORTHO05D004238 5.4e-25 118.6 171 60.2
BraA04t18758Z Brassica rapa HOM05D000156 ORTHO05D004238 7.0e-25 118.2 86 73.3
C03p29080 Brassica napus HOM05D000156 ORTHO05D004238 9.2e-25 117.9 101 63.4
AL5G41760 Arabidopsis lyrata HOM05D000156 ORTHO05D004238 2.0e-24 116.7 178 67.4
TAR633G2215 Trochodendron aralioides HOM05D000156 ORTHO05D004238 2.7e-24 116.3 97 64.9
Oeu048443.1 Olea europaea HOM05D000156 ORTHO05D004238 3.5e-24 115.9 180 63.3
BraA03t11649Z Brassica rapa HOM05D000156 ORTHO05D004238 4.5e-24 115.5 91 67.0
CiPaw.01G170100 Carya illinoinensis HOM05D000156 ORTHO05D004238 4.5e-24 115.5 152 69.7
Sc13g0006920 Simmondsia chinensis HOM05D000156 ORTHO05D004238 4.5e-24 115.5 93 68.8
BcaB06g29339 Brassica carinata HOM05D000156 ORTHO05D004238 5.9e-24 115.2 98 62.2
BcaC07g40500 Brassica carinata HOM05D000156 ORTHO05D004238 2.9e-23 112.8 99 64.6
Nn1g09546 Nelumbo nucifera HOM05D000156 ORTHO05D004238 2.9e-23 112.8 88 65.9
BcaB02g08910 Brassica carinata HOM05D000156 ORTHO05D004238 3.8e-23 112.5 89 66.3
Migut.N03063 Erythranthe guttata HOM05D000156 ORTHO05D004238 3.8e-23 112.5 197 54.8
CANSAT56G2250 Cannabis sativa HOM05D000156 ORTHO05D004238 5.0e-23 112.1 180 60.6
PSO573G0008 Papaver somniferum HOM05D000156 ORTHO05D004238 5.0e-23 112.1 97 61.9
CARHR170060 Cardamine hirsuta HOM05D000156 ORTHO05D004238 6.6e-23 111.7 195 42.6
A05p03910 Brassica napus HOM05D000156 ORTHO05D004238 1.1e-22 110.9 91 65.9
MBI11_g16035_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D004238 1.1e-22 110.9 73 74.0
BcaC02g12373 Brassica carinata HOM05D000156 ORTHO05D004238 1.5e-22 110.5 91 65.9
C04p04640 Brassica napus HOM05D000156 ORTHO05D004238 1.5e-22 110.5 91 65.9
HanXRQChr11g0343121 Helianthus annuus HOM05D000156 ORTHO05D004238 4.3e-22 109.0 186 65.6
Rhsim09G0009500 Rhododendron simsii HOM05D000156 ORTHO05D004238 9.5e-22 107.8 188 63.8
Eucgr.L00007 Eucalyptus grandis HOM05D000156 ORTHO05D004238 1.2e-21 107.5 98 60.2
Lsat_1_v5_gn_1_75020 Lactuca sativa HOM05D000156 ORTHO05D004238 1.6e-21 107.1 191 48.2
Ah.07g202840 Amaranthus hybridus HOM05D000156 ORTHO05D004238 3.6e-21 105.9 197 38.1
MSTRG.24565 Avicennia marina HOM05D000156 ORTHO05D004238 3.6e-21 105.9 97 63.9
PSO017G4103 Papaver somniferum HOM05D000156 ORTHO05D004238 4.7e-21 105.5 89 61.8
Nn7g37541 Nelumbo nucifera HOM05D000156 ORTHO05D004238 6.1e-21 105.1 173 59.0
Lj6A211G16 Lonicera japonica HOM05D000156 ORTHO05D004238 8.0e-21 104.8 179 45.3
Lj6A221G17 Lonicera japonica HOM05D000156 ORTHO05D004238 8.0e-21 104.8 178 43.8
BolC4t22095H Brassica oleracea HOM05D000156 ORTHO05D004238 1.4e-20 104.0 97 61.9
THA.LOC104812137 Tarenaya hassleriana HOM05D000156 ORTHO05D004238 1.4e-20 104.0 193 44.6
BraA05t19378Z Brassica rapa HOM05D000156 ORTHO05D004238 1.2e-19 100.9 97 60.8
Oeu015715.1 Olea europaea HOM05D000156 ORTHO05D004238 7.5e-19 98.2 191 61.3
SalBow3G3788 Salvia bowleyana HOM05D000156 ORTHO05D004238 4.9e-18 95.5 171 46.2
CAN.G136.7 Capsicum annuum HOM05D000156 ORTHO05D004238 2.4e-17 93.2 104 58.7
Aa31LG10G13980 Aethionema arabicum HOM05D000156 ORTHO05D004238 9.2e-17 91.3 178 44.9
Aqoxy5G04069 Aquilegia oxysepala HOM05D000156 ORTHO05D004238 1.0e-15 87.8 89 59.6
PGSC0003DMG401016333 Solanum tuberosum HOM05D000156 ORTHO05D004238 1.0e-15 87.8 104 57.7
BcaC02g07158 Brassica carinata HOM05D000156 ORTHO05D004238 1.3e-15 87.4 74 59.5
CsaV3_4G002720 Cucumis sativus L. HOM05D000156 ORTHO05D004238 1.3e-15 87.4 92 55.4
MELO3C017768.2 Cucumis melo HOM05D000156 ORTHO05D004238 2.3e-15 86.7 92 55.4
Sopen06g018530 Solanum pennellii HOM05D000156 ORTHO05D004238 3.9e-15 85.9 107 56.1
Lsat_1_v5_gn_6_67641 Lactuca sativa HOM05D000156 ORTHO05D004238 5.0e-15 85.5 176 50.6
Lju470A16G19 Lonicera japonica HOM05D000156 ORTHO05D004238 5.0e-15 85.5 173 56.6
Solyc06g053450.4 Solanum lycopersicum HOM05D000156 ORTHO05D004238 1.5e-14 84.0 97 57.7
Sed0024934 Sechium edule HOM05D000156 ORTHO05D004238 2.5e-14 83.2 92 54.3
Nitab4.5_0007474g0010 Nicotiana tabacum HOM05D000156 ORTHO05D004238 5.6e-14 82.0 97 54.6
Sed0007974 Sechium edule HOM05D000156 ORTHO05D004238 5.6e-14 82.0 99 52.5
Nitab4.5_0007368g0010 Nicotiana tabacum HOM05D000156 ORTHO05D004238 2.1e-13 80.1 98 54.1
SGA_v2.0_scaffold25G11000 Striga asiatica HOM05D000156 ORTHO05D004238 2.1e-13 80.1 189 36.5
Peaxi162Scf00180g00010 Petunia axillaris HOM05D000156 ORTHO05D004238 3.7e-10 69.3 88 53.4
unitig_8.g4798 Utricularia gibba HOM05D000156 ORTHO05D004238 3.2e-09 66.2 100 43.0
HanXRQChr02g0059121 Helianthus annuus HOM05D000156 ORTHO05D004238 2.3e-07 60.1 85 47.1
SGA_v2.0_scaffold19G08847 Striga asiatica HOM05D000156 ORTHO05D004238 3.9e-07 59.3 170 37.1
Zm00001eb365750 Zea mays HOM05D000156 ORTHO05D004238 1.5e-06 57.4 105 39.0
SHI30266 Sapria himalayana HOM05D000156 ORTHO05D004238 3.3e-06 56.2 74 47.3


User provided reference genes

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