Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 0.0e+00 1330.9 681 100.0
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 9.3e-312 1072.8 686 78.6
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 1.9e-308 1062.0 688 78.6
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 2.5e-308 1061.6 685 78.8
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 8.1e-307 1056.6 685 77.7
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 3.4e-305 1051.2 623 82.7
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.3e-304 1049.3 683 78.5
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 5.1e-301 1037.3 688 76.6
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 3.7e-299 1031.2 685 75.9
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 1.7e-296 1022.3 686 77.7
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 1.7e-296 1022.3 691 76.8
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 4.2e-295 1017.7 681 75.3
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 4.2e-295 1017.7 689 73.4
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.9e-292 1008.8 636 77.4
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 2.5e-292 1008.4 680 74.1
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 2.8e-291 1005.0 681 74.7
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 4.8e-291 1004.2 693 74.6
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 8.2e-291 1003.4 690 74.9
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 2.4e-290 1001.9 679 74.5
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 6.9e-290 1000.3 686 74.8
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 6.9e-290 1000.3 690 73.0
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.5e-289 999.2 687 74.8
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 3.4e-289 998.0 681 72.7
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 2.2e-288 995.3 680 73.1
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 2.9e-288 995.0 696 74.3
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 9.3e-287 989.9 687 74.8
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 2.1e-286 988.8 685 74.5
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 7.9e-286 986.9 681 73.6
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 1.0e-285 986.5 691 74.5
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 2.3e-285 985.3 688 72.5
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.0e-285 984.9 688 73.1
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.3e-284 981.5 684 72.8
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 9.7e-284 979.9 695 73.8
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 9.7e-284 979.9 687 73.2
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.3e-283 979.5 688 72.2
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 3.7e-283 978.0 688 72.5
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.7e-283 978.0 688 72.4
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 1.4e-279 966.1 686 72.4
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 4.2e-279 964.5 685 72.3
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 9.4e-279 963.4 687 69.1
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 1.2e-278 963.0 677 73.3
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 1.6e-278 962.6 679 72.5
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 1.6e-278 962.6 684 72.4
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 4.6e-278 961.1 677 72.2
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 4.6e-278 961.1 688 72.1
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 6.1e-278 960.7 690 71.2
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 1.0e-277 959.9 686 72.0
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 1.8e-277 959.1 681 72.5
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 2.0e-276 955.7 682 71.3
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 2.2e-275 952.2 679 71.6
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 1.1e-274 949.9 681 71.4
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 1.1e-274 949.9 677 71.0
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 1.4e-274 949.5 680 70.7
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 1.4e-274 949.5 673 71.0
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 1.8e-274 949.1 683 71.7
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 2.4e-274 948.7 681 71.2
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 3.1e-274 948.3 683 71.4
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 5.3e-274 947.6 680 71.2
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 6.9e-274 947.2 681 71.1
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 2.6e-273 945.3 680 71.0
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 7.7e-273 943.7 642 74.8
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 5.5e-271 937.6 682 70.1
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 1.6e-270 936.0 671 70.6
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 2.0e-268 929.1 681 68.7
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 1.3e-267 926.4 685 70.1
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 1.3e-267 926.4 623 71.9
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 6.3e-267 924.1 685 69.3
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 5.3e-266 921.0 693 69.7
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 5.3e-266 921.0 689 68.7
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 9.1e-266 920.2 710 69.3
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 1.2e-265 919.8 696 67.8
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 2.6e-265 918.7 692 69.4
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 2.9e-264 915.2 698 69.5
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.5e-263 912.9 642 72.6
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 5.5e-263 911.0 640 72.5
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 8.0e-262 907.1 673 68.8
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 1.7e-259 899.4 688 69.3
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 7.0e-258 894.0 680 65.7
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 2.6e-257 892.1 679 65.2
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.0e-253 880.2 703 66.0
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 8.3e-251 870.5 559 79.1
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 2.0e-249 865.9 569 71.9
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 3.6e-246 855.1 682 67.0
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 3.4e-244 848.6 560 77.0
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 9.1e-242 840.5 563 76.6
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 1.5e-239 833.2 803 57.0
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 4.7e-238 828.2 636 66.0
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 1.8e-237 826.2 676 64.6
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 2.7e-233 812.4 559 71.9
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.3e-229 799.3 770 56.6
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 3.4e-228 795.4 685 62.6
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.4e-226 789.3 623 62.6
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 1.2e-217 760.4 552 69.6
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 9.2e-210 734.2 471 80.9
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 9.9e-196 687.6 581 59.4
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 3.0e-192 676.0 790 50.0
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 7.7e-164 581.6 392 70.9
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 5.3e-149 532.3 379 71.5
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 3.8e-139 499.6 422 59.0
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 5.5e-130 469.2 520 49.0
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 3.4e-119 433.3 583 44.3
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 2.4e-117 427.2 350 65.4
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 6.2e-105 386.0 279 69.2
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.1e-98 365.2 336 58.6
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.1e-98 365.2 336 58.6
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 9.9e-95 352.1 272 65.1
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 1.6e-84 318.2 554 37.5
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 1.7e-78 298.1 235 66.8
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.1e-77 295.4 249 58.6
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 1.3e-57 228.8 566 29.0
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 5.0e-54 216.9 252 47.2
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.1e-52 211.5 215 52.6
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.6e-39 167.9 147 64.6
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 3.2e-37 161.0 180 47.8
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 1.0e-30 139.4 138 51.4
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 1.2e-26 125.9 124 49.2
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 2.2e-09 68.6 80 41.2
Cre07.g348500 Chlamydomonas reinhardtii HOM05D006589 ORTHO05D008350 2.0e-07 62.0 79 36.7


User provided reference genes

Program Settings