Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 2424.4 1202 100.0
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 2025.0 1202 81.9
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1919.4 1202 77.0
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1907.9 1203 76.9
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1895.9 1242 75.1
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1879.0 1199 75.6
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1875.1 1202 75.5
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1874.0 1202 75.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1872.1 1202 76.0
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1871.7 1202 76.3
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1870.1 1172 77.2
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1857.0 1202 74.8
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1853.6 1192 75.3
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1845.9 1204 74.5
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1834.7 1198 74.4
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1828.1 1196 74.9
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1826.2 1204 73.9
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1823.1 1204 73.9
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1822.0 1202 73.9
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1812.0 1185 74.3
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1808.1 1204 73.3
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1800.4 1196 73.1
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1796.9 1196 73.4
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1790.8 1194 73.2
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1783.1 1196 72.3
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1780.8 1203 73.1
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1769.6 1316 67.7
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1763.0 1204 71.2
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1760.0 1195 71.2
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1754.6 1204 71.2
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1739.9 1188 71.2
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1734.9 1196 70.7
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1734.2 1202 69.4
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1732.6 1196 70.6
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1725.3 1180 71.0
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1724.1 1196 70.3
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1721.1 1196 70.1
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1719.1 1204 69.4
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1718.0 1220 68.7
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1714.9 1201 69.9
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1713.7 1197 69.8
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1712.2 1197 69.4
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1707.2 1213 68.9
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1705.6 1197 69.3
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1696.4 1208 68.5
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1696.0 1194 68.8
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1691.0 1201 68.0
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1690.2 1200 68.2
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1689.1 1204 68.6
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1688.7 1196 68.4
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1688.3 1194 68.8
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1686.0 1201 67.9
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1683.7 1197 68.1
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1683.7 1208 68.2
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1680.2 1199 67.7
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1678.7 1207 67.5
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1676.4 1211 68.8
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1672.9 1199 67.7
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1671.8 1198 67.6
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1663.7 1195 68.2
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1661.7 1198 67.5
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1652.1 1202 66.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1650.2 1198 66.6
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1649.0 1194 67.8
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1647.5 1198 66.3
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1647.1 1198 67.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1645.2 1198 66.6
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1644.0 1198 66.4
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1643.2 1198 66.4
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1642.5 1131 70.0
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1636.7 1204 65.9
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1629.4 1207 65.5
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1626.3 1221 65.1
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1625.9 1243 64.0
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1623.2 1194 66.6
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1619.8 1163 67.2
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1618.6 1194 65.8
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1608.6 1265 63.2
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1602.8 1205 64.9
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1602.8 1187 65.6
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1602.4 1156 67.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1582.8 1204 64.5
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1577.4 1024 74.8
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1576.6 1202 64.8
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1570.8 1197 64.4
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1202 64.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1259 60.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1535.0 1188 63.9
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1527.3 1243 61.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1498.0 1194 62.0
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1468.0 1285 58.7
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1463.4 1018 69.9
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1451.0 971 73.2
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1427.2 1190 58.3
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1421.8 1190 59.1
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1418.3 1203 58.9
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1401.0 1202 61.1
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1355.1 989 68.4
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1353.2 1191 59.0
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1315.4 1199 57.5
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1285.4 1223 55.9
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1245.3 1215 50.9
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1229.9 1199 51.3
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1212.6 1172 50.9
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1200.7 841 68.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1199.9 1223 50.9
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1161.0 857 69.2
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.4e-309 1065.8 713 72.8
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 7.1e-306 1054.3 782 65.3
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.0e-293 1011.9 719 69.5
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.5e-268 930.2 1068 46.1
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 6.1e-257 891.7 1100 43.5
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 5.4e-245 852.0 1172 43.8
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 3.3e-242 842.8 589 69.4
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 5.6e-210 735.7 756 52.8
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.9e-205 720.7 561 64.9
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 4.6e-204 716.1 481 70.7
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.1e-194 684.9 485 67.8
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.2e-164 585.1 387 74.9
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 1.1e-149 535.4 411 65.5
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 9.7e-146 522.3 587 50.1
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 6.5e-142 509.6 718 41.1
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 6.6e-102 376.7 257 70.4
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 3.6e-92 344.4 377 48.5
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 4.0e-83 314.3 274 58.8
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 5.3e-75 287.3 179 78.8
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 3.0e-62 245.0 202 63.9
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 3.1e-59 235.0 289 43.3
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.5e-53 215.3 141 76.6
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 4.3e-53 214.5 238 50.8
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.7e-53 214.2 293 40.6
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 5.5e-32 144.4 161 47.8
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 4.4e-29 134.8 156 50.0
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 6.3e-20 104.4 72 63.9
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 2.7e-18 99.0 203 36.5
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 1.5e-13 83.2 320 23.4
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 3.4e-13 82.0 60 70.0
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 1.3e-12 80.1 94 45.7
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 7.0e-11 74.3 107 40.2
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 2.9e-09 68.9 94 43.6
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 5.6e-08 64.7 53 52.8
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 5.6e-08 64.7 64 53.1
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 2.1e-07 62.8 49 55.1
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 3.6e-07 62.0 59 57.6
A09p25680 Brassica napus HOM05D005254 ORTHO05D100756 8.9e-06 57.4 24 87.5


User provided reference genes

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