Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10017723m.g Citrus clementina HOM05D004371 ORTHO05D002186 9.7e-58 226.5 106 100.0
Ciclev10002417m.g Citrus clementina HOM05D004371 ORTHO05D002186 2.8e-36 155.2 107 70.1
Ciclev10016890m.g Citrus clementina HOM05D004371 ORTHO05D002186 2.0e-34 149.1 107 68.2
Potri.014G022100 Populus trichocarpa HOM05D004371 ORTHO05D002186 9.5e-21 103.6 111 49.5
Manes.05G178400 Manihot esculenta HOM05D004371 ORTHO05D002186 4.7e-20 101.3 112 48.2
TWI09G1286 Tripterygium wilfordii HOM05D004371 ORTHO05D002186 6.2e-20 100.9 112 49.1
Sabra14G0014700 Salix brachista HOM05D004371 ORTHO05D002186 8.1e-20 100.5 111 47.7
Sed0008652 Sechium edule HOM05D004371 ORTHO05D002186 1.1e-19 100.1 108 46.3
Lj4C65T11 Lonicera japonica HOM05D004371 ORTHO05D002186 2.3e-19 99.0 94 56.4
PGR083G0083 Punica granatum HOM05D004371 ORTHO05D002186 3.1e-19 98.6 98 52.0
TWI56G0459 Tripterygium wilfordii HOM05D004371 ORTHO05D002186 3.1e-19 98.6 114 49.1
Thecc.08G095700 Theobroma cacao HOM05D004371 ORTHO05D002186 5.2e-19 97.8 107 47.7
ClCG05G020280 Citrullus lanatus HOM05D004371 ORTHO05D002186 6.8e-19 97.4 117 43.6
Medtr3g102470 Medicago truncatula HOM05D004371 ORTHO05D002186 6.8e-19 97.4 103 52.4
Ca_15926_v3 Cicer arietinum L. HOM05D004371 ORTHO05D002186 2.6e-18 95.5 100 51.0
FAN20G0811 Fragaria x ananassa HOM05D004371 ORTHO05D002186 2.6e-18 95.5 121 45.5
RcHm_v2.0_Chr6g0308861 Rosa chinensis HOM05D004371 ORTHO05D002186 2.6e-18 95.5 113 46.9
vmacro04572 Vaccinium macrocarpon HOM05D004371 ORTHO05D002186 3.4e-18 95.1 95 53.7
Dinv35916 Davidia involucrata HOM05D004371 ORTHO05D002186 4.4e-18 94.7 97 51.5
Potri.002G122300 Populus trichocarpa HOM05D004371 ORTHO05D002186 4.4e-18 94.7 113 46.0
Cpa.g.sc21.140 Carica papaya HOM05D004371 ORTHO05D002186 5.8e-18 94.4 115 44.3
CiPaw.16G035400 Carya illinoinensis HOM05D004371 ORTHO05D002186 5.8e-18 94.4 74 60.8
CsaV3_4G034760 Cucumis sativus L. HOM05D004371 ORTHO05D002186 5.8e-18 94.4 125 40.8
MELO3C016791.2 Cucumis melo HOM05D004371 ORTHO05D002186 7.5e-18 94.0 126 40.5
FvH4_2g33690 Fragaria vesca HOM05D004371 ORTHO05D002186 7.5e-18 94.0 121 44.6
FAN24G0693 Fragaria x ananassa HOM05D004371 ORTHO05D002186 7.5e-18 94.0 121 44.6
VMungo1309G1530 Vigna mungo HOM05D004371 ORTHO05D002186 9.8e-18 93.6 107 50.5
AT4G24210 Arabidopsis thaliana HOM05D004371 ORTHO05D002186 1.3e-17 93.2 87 54.0
CARHR231630 Cardamine hirsuta HOM05D004371 ORTHO05D002186 1.3e-17 93.2 87 54.0
FAN27G3108 Fragaria x ananassa HOM05D004371 ORTHO05D002186 1.3e-17 93.2 123 43.9
THA.LOC104825757 Tarenaya hassleriana HOM05D004371 ORTHO05D002186 1.3e-17 93.2 112 45.5
VMungo1383G3095 Vigna mungo HOM05D004371 ORTHO05D002186 1.3e-17 93.2 93 53.8
Actinidia38086 Actinidia chinensis HOM05D004371 ORTHO05D002186 1.7e-17 92.8 93 52.7
CiPaw.15G050400 Carya illinoinensis HOM05D004371 ORTHO05D002186 1.7e-17 92.8 115 42.6
Thhalv10026481m.g Eutrema salsugineum HOM05D004371 ORTHO05D002186 1.7e-17 92.8 79 58.2
QL02p003441 Quercus lobata HOM05D004371 ORTHO05D002186 1.7e-17 92.8 81 56.8
Rhsim07G0223800 Rhododendron simsii HOM05D004371 ORTHO05D002186 1.7e-17 92.8 97 51.5
COL.COLO4_03644 Corchorus olitorius HOM05D004371 ORTHO05D002186 2.2e-17 92.4 107 45.8
Duzib116G0411 Durio zibethinus HOM05D004371 ORTHO05D002186 2.9e-17 92.0 107 48.6
FAN15G2080 Fragaria x ananassa HOM05D004371 ORTHO05D002186 2.9e-17 92.0 84 54.8
Psat5g040440 Pisum sativum HOM05D004371 ORTHO05D002186 2.9e-17 92.0 107 48.6
ATR0205G008 Amborella trichopoda HOM05D004371 ORTHO05D002186 3.7e-17 91.7 106 49.1
CSS0047169 Camellia sinensis var. sinensis HOM05D004371 ORTHO05D002186 3.7e-17 91.7 81 56.8
CiPaw.16G035500 Carya illinoinensis HOM05D004371 ORTHO05D002186 3.7e-17 91.7 111 46.8
Phvul.009G068500 Phaseolus vulgaris HOM05D004371 ORTHO05D002186 4.9e-17 91.3 105 50.5
Sp7g22190 Schrenkiella parvula HOM05D004371 ORTHO05D002186 4.9e-17 91.3 79 57.0
CANSAT01G0966 Cannabis sativa HOM05D004371 ORTHO05D002186 6.4e-17 90.9 121 42.1
Glyma.04G042900 Glycine max HOM05D004371 ORTHO05D002186 6.4e-17 90.9 85 55.3
Aa31LG7G10250 Aethionema arabicum HOM05D004371 ORTHO05D002186 8.3e-17 90.5 87 51.7
Duzib041G0027 Durio zibethinus HOM05D004371 ORTHO05D002186 8.3e-17 90.5 107 45.8
AL7G29060 Arabidopsis lyrata HOM05D004371 ORTHO05D002186 1.1e-16 90.1 87 52.9
Glyma.06G043400 Glycine max HOM05D004371 ORTHO05D002186 1.4e-16 89.7 75 60.0
Prupe.1G429300 Prunus persica HOM05D004371 ORTHO05D002186 1.9e-16 89.4 115 43.5
Gohir.A06G022200 Gossypium hirsutum HOM05D004371 ORTHO05D002186 2.4e-16 89.0 107 44.9
Gohir.D05G264800 Gossypium hirsutum HOM05D004371 ORTHO05D002186 2.4e-16 89.0 107 46.7
Gohir.D06G019600 Gossypium hirsutum HOM05D004371 ORTHO05D002186 2.4e-16 89.0 107 44.9
Gorai.009G276600 Gossypium raimondii HOM05D004371 ORTHO05D002186 2.4e-16 89.0 107 46.7
Gorai.010G023800 Gossypium raimondii HOM05D004371 ORTHO05D002186 2.4e-16 89.0 107 44.9
Lalb_Chr11g0062751 Lupinus albus HOM05D004371 ORTHO05D002186 2.4e-16 89.0 105 50.5
Haze_18084 Corylus avellana HOM05D004371 ORTHO05D002186 3.2e-16 88.6 116 43.1
DCAR_012798 Daucus carota HOM05D004371 ORTHO05D002186 3.2e-16 88.6 97 51.5
Duzib093G1937 Durio zibethinus HOM05D004371 ORTHO05D002186 4.1e-16 88.2 107 45.8
Glyma.17G237800 Glycine max HOM05D004371 ORTHO05D002186 4.1e-16 88.2 102 47.1
SEGI_33552 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 4.1e-16 88.2 90 52.2
Lsat_1_v5_gn_4_129880 Lactuca sativa HOM05D004371 ORTHO05D002186 5.4e-16 87.8 81 55.6
Cfa018041 Carpinus fangiana HOM05D004371 ORTHO05D002186 7.1e-16 87.4 74 58.1
TPR.G25607 Trifolium pratense HOM05D004371 ORTHO05D002186 7.1e-16 87.4 81 55.6
BcaC09g50896 Brassica carinata HOM05D004371 ORTHO05D002186 9.2e-16 87.0 80 53.8
A01p15540 Brassica napus HOM05D004371 ORTHO05D002186 9.2e-16 87.0 80 53.8
C01p19460 Brassica napus HOM05D004371 ORTHO05D002186 9.2e-16 87.0 80 53.8
BolC1t01875H Brassica oleracea HOM05D004371 ORTHO05D002186 9.2e-16 87.0 80 53.8
BraA01t01493Z Brassica rapa HOM05D004371 ORTHO05D002186 9.2e-16 87.0 80 53.8
Carub.0007s1686 Capsella rubella HOM05D004371 ORTHO05D002186 9.2e-16 87.0 87 51.7
MD08G1091700 Malus domestica HOM05D004371 ORTHO05D002186 9.2e-16 87.0 117 41.9
BcaNung01127 Brassica carinata HOM05D004371 ORTHO05D002186 1.2e-15 86.7 80 53.8
MELO3C010832.2 Cucumis melo HOM05D004371 ORTHO05D002186 1.2e-15 86.7 83 56.6
Hma1.2p1_0240F.1_g100160 Hydrangea macrophylla HOM05D004371 ORTHO05D002186 1.2e-15 86.7 74 56.8
Sopen04g031990 Solanum pennellii HOM05D004371 ORTHO05D002186 1.2e-15 86.7 104 50.0
TAR381G0906 Trochodendron aralioides HOM05D004371 ORTHO05D002186 1.2e-15 86.7 105 48.6
Nn5g31361 Nelumbo nucifera HOM05D004371 ORTHO05D002186 1.6e-15 86.3 86 55.8
Nn5g31362 Nelumbo nucifera HOM05D004371 ORTHO05D002186 1.6e-15 86.3 86 55.8
Nn5g31363 Nelumbo nucifera HOM05D004371 ORTHO05D002186 1.6e-15 86.3 86 55.8
BcaC06g32900 Brassica carinata HOM05D004371 ORTHO05D002186 2.1e-15 85.9 74 55.4
Dinv26873 Davidia involucrata HOM05D004371 ORTHO05D002186 2.7e-15 85.5 109 45.9
Sed0011342 Sechium edule HOM05D004371 ORTHO05D002186 2.7e-15 85.5 128 37.5
Atru.chr13.769 Acer truncatum HOM05D004371 ORTHO05D002186 4.6e-15 84.7 107 46.7
HanXRQChr09g0267301 Helianthus annuus HOM05D004371 ORTHO05D002186 4.6e-15 84.7 74 56.8
Sc15g0005500 Simmondsia chinensis HOM05D004371 ORTHO05D002186 4.6e-15 84.7 99 47.5
Sc15g0005820 Simmondsia chinensis HOM05D004371 ORTHO05D002186 4.6e-15 84.7 99 47.5
CDE07G1639 Ceratophyllum demersum HOM05D004371 ORTHO05D002186 6.0e-15 84.3 107 42.1
HPP92_004762 Vanilla planifolia HOM05D004371 ORTHO05D002186 7.8e-15 84.0 79 55.7
HPP92_027899 Vanilla planifolia HOM05D004371 ORTHO05D002186 7.8e-15 84.0 79 55.7
ClCG08G016220 Citrullus lanatus HOM05D004371 ORTHO05D002186 1.0e-14 83.6 78 57.7
vmacro23169 Vaccinium macrocarpon HOM05D004371 ORTHO05D002186 1.0e-14 83.6 77 58.4
CsaV3_2G026400 Cucumis sativus L. HOM05D004371 ORTHO05D002186 1.3e-14 83.2 83 54.2
PSO017G6350 Papaver somniferum HOM05D004371 ORTHO05D002186 1.3e-14 83.2 75 54.7
TAR628G0756 Trochodendron aralioides HOM05D004371 ORTHO05D002186 1.3e-14 83.2 94 47.9
PSO349G0342 Papaver somniferum HOM05D004371 ORTHO05D002186 1.7e-14 82.8 75 54.7
ECA246G0242 Erigeron canadensis HOM05D004371 ORTHO05D002186 2.3e-14 82.4 88 50.0
Nitab4.5_0001984g0070 Nicotiana tabacum HOM05D004371 ORTHO05D002186 2.3e-14 82.4 105 48.6
PSO170G2383 Papaver somniferum HOM05D004371 ORTHO05D002186 2.3e-14 82.4 88 48.9
PSO210G6412 Papaver somniferum HOM05D004371 ORTHO05D002186 2.3e-14 82.4 75 54.7
Cfa004067 Carpinus fangiana HOM05D004371 ORTHO05D002186 3.0e-14 82.0 85 50.6
Haze_15343 Corylus avellana HOM05D004371 ORTHO05D002186 3.0e-14 82.0 85 50.6
Eucgr.F00160 Eucalyptus grandis HOM05D004371 ORTHO05D002186 3.0e-14 82.0 91 49.5
Dinv39259 Davidia involucrata HOM05D004371 ORTHO05D002186 3.9e-14 81.6 74 59.5
HanXRQChr02g0038061 Helianthus annuus HOM05D004371 ORTHO05D002186 3.9e-14 81.6 79 55.7
Lsat_1_v5_gn_6_109301 Lactuca sativa HOM05D004371 ORTHO05D002186 3.9e-14 81.6 111 42.3
Ah.06g192890 Amaranthus hybridus HOM05D004371 ORTHO05D002186 5.1e-14 81.3 80 53.8
Actinidia08268 Actinidia chinensis HOM05D004371 ORTHO05D002186 8.6e-14 80.5 94 51.1
Gohir.A05G262600 Gossypium hirsutum HOM05D004371 ORTHO05D002186 8.6e-14 80.5 107 43.9
MD15G1075800 Malus domestica HOM05D004371 ORTHO05D002186 8.6e-14 80.5 85 49.4
Solyc04g078390.3 Solanum lycopersicum HOM05D004371 ORTHO05D002186 8.6e-14 80.5 104 48.1
CAN.G1621.8 Capsicum annuum HOM05D004371 ORTHO05D002186 1.1e-13 80.1 93 52.7
CDE04G3464 Ceratophyllum demersum HOM05D004371 ORTHO05D002186 1.1e-13 80.1 74 52.7
ECA247G1975 Erigeron canadensis HOM05D004371 ORTHO05D002186 1.1e-13 80.1 88 48.9
Glyma.14G086600 Glycine max HOM05D004371 ORTHO05D002186 1.1e-13 80.1 84 47.6
Lsat_1_v5_gn_1_23100 Lactuca sativa HOM05D004371 ORTHO05D002186 1.1e-13 80.1 79 53.2
Lj1g0004679 Lotus japonicus HOM05D004371 ORTHO05D002186 1.5e-13 79.7 75 54.7
Nitab4.5_0005426g0010 Nicotiana tabacum HOM05D004371 ORTHO05D002186 1.9e-13 79.3 103 47.6
Peaxi162Scf00266g00081 Petunia axillaris HOM05D004371 ORTHO05D002186 1.9e-13 79.3 98 50.0
PGSC0003DMG400003310 Solanum tuberosum HOM05D004371 ORTHO05D002186 1.9e-13 79.3 102 50.0
Ciclev10023649m.g Citrus clementina HOM05D003131 ORTHO05D002186 4.3e-13 78.2 98 46.9
HanXRQChr05g0150141 Helianthus annuus HOM05D004371 ORTHO05D002186 4.3e-13 78.2 81 46.9
SGA_v2.0_scaffold197G41047 Striga asiatica HOM05D004371 ORTHO05D002186 7.3e-13 77.4 105 44.8
Cc10_g05190 Coffea canephora HOM05D004371 ORTHO05D002186 9.5e-13 77.0 98 48.0
CiPaw.02G005700 Carya illinoinensis HOM05D004371 ORTHO05D002186 1.2e-12 76.6 74 51.4
SHI08356 Sapria himalayana HOM05D004371 ORTHO05D002186 1.6e-12 76.3 95 47.4
Rhsim06G0057000 Rhododendron simsii HOM05D004371 ORTHO05D002186 2.8e-12 75.5 102 46.1
Aqoxy5G01137 Aquilegia oxysepala HOM05D004371 ORTHO05D002186 8.1e-12 73.9 71 50.7
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 8.1e-12 73.9 86 48.8
Oeu057260.2 Olea europaea HOM05D004371 ORTHO05D002186 5.2e-11 71.2 117 40.2
Ciclev10024024m.g Citrus clementina HOM05D004371 ORTHO05D002186 6.8e-11 70.9 98 42.9
Oeu021393.1 Olea europaea HOM05D004371 ORTHO05D002186 6.8e-11 70.9 116 43.1
HanXRQChr04g0103351 Helianthus annuus HOM05D004371 ORTHO05D002186 8.9e-11 70.5 79 49.4
HanXRQChr04g0103321 Helianthus annuus HOM05D004371 ORTHO05D002186 1.2e-10 70.1 78 48.7
Aqoxy6G02847 Aquilegia oxysepala HOM05D004371 ORTHO05D002186 1.5e-10 69.7 85 49.4
Migut.C00522 Erythranthe guttata HOM05D004371 ORTHO05D002186 2.0e-10 69.3 105 41.9
Lj5g0006485 Lotus japonicus HOM05D004371 ORTHO05D002186 7.6e-10 67.4 75 42.7
Mapoly0043s0052 Marchantia polymorpha HOM05D004371 ORTHO05D002186 2.9e-09 65.5 83 43.4
Zm00001eb183250 Zea mays HOM05D004371 ORTHO05D002186 1.1e-08 63.5 96 38.5
SMO271G0134 Selaginella moellendorffii HOM05D004371 ORTHO05D002186 1.4e-08 63.2 98 38.8
unitig_748.g7786 Utricularia gibba HOM05D004371 ORTHO05D002186 2.1e-07 59.3 112 36.6
Zm00001eb245180 Zea mays HOM05D004371 ORTHO05D002186 3.5e-07 58.5 71 43.7
MSTRG.25064 Avicennia marina HOM05D004371 ORTHO05D002186 1.7e-06 56.2 103 37.9


User provided reference genes

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