Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.2e-172 609.8 312 100.0
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.0e-118 430.6 312 72.1
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 7.4e-106 387.9 313 64.9
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 2.9e-102 375.9 314 63.7
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 3.8e-102 375.6 313 62.3
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 8.8e-99 364.4 319 64.3
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 2.8e-97 359.4 314 62.1
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 1.4e-96 357.1 306 61.8
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.7e-95 352.8 311 59.8
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.3e-94 350.5 315 59.7
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 6.5e-94 348.2 315 57.8
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 3.2e-93 345.9 315 59.0
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 4.2e-93 345.5 312 59.3
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 8.0e-92 341.3 321 57.3
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 3.0e-91 339.3 315 58.7
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 3.0e-91 339.3 306 60.5
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.2e-91 338.6 313 59.4
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 8.8e-91 337.8 297 60.3
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.2e-90 337.4 307 58.0
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 5.7e-90 335.1 305 59.7
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 9.8e-90 334.3 305 59.7
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 9.8e-90 334.3 312 56.7
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 4.1e-88 328.9 313 59.4
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.6e-87 327.0 324 57.7
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.7e-86 323.6 277 63.5
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.5e-85 320.5 313 57.8
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 3.2e-85 319.3 317 55.2
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.2e-85 319.3 318 54.4
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 7.2e-85 318.2 320 56.9
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 9.5e-85 317.8 320 54.1
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 2.8e-84 316.2 312 54.5
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.3e-83 313.2 232 65.5
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 2.3e-83 313.2 304 56.2
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 3.0e-83 312.8 311 55.3
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 4.0e-83 312.4 302 56.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 8.8e-83 311.2 312 51.6
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 1.3e-81 307.4 312 50.6
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.3e-81 307.4 312 51.0
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 2.2e-81 306.6 302 57.9
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 2.8e-81 306.2 302 51.7
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 6.3e-81 305.1 312 52.9
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.8e-80 303.5 305 55.4
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.8e-80 303.5 399 45.9
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 1.1e-77 294.3 311 54.0
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.2e-76 290.8 289 57.8
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 3.6e-76 289.3 312 51.3
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 6.1e-76 288.5 319 51.4
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 8.0e-76 288.1 293 53.6
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 8.0e-76 288.1 323 51.1
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.4e-75 287.3 306 53.3
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 1.4e-75 287.3 285 54.4
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.8e-75 287.0 293 53.6
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 8.9e-75 284.6 279 54.1
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.5e-74 283.9 305 51.8
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.0e-74 283.5 308 51.6
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 9.8e-74 281.2 301 53.5
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 8.3e-73 278.1 309 50.8
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.1e-72 277.7 286 55.2
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 5.4e-72 275.4 310 51.6
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 7.0e-72 275.0 309 49.8
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 2.0e-71 273.5 309 49.8
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 5.9e-71 271.9 246 61.4
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 7.8e-71 271.6 310 49.7
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.3e-70 270.8 306 51.3
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 3.9e-70 269.2 305 51.5
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 2.5e-69 266.5 312 49.4
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 4.3e-69 265.8 311 48.9
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 4.3e-69 265.8 309 47.6
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 9.5e-69 264.6 319 50.5
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 9.5e-69 264.6 313 48.6
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.2e-66 257.7 281 51.6
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 7.5e-66 255.0 308 48.7
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 9.8e-66 254.6 233 52.8
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.9e-65 253.1 311 47.6
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.9e-65 252.3 325 44.9
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 2.0e-63 246.9 252 52.8
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 2.7e-63 246.5 250 56.8
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 6.0e-63 245.4 253 52.2
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.7e-62 243.8 259 51.0
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 2.3e-62 243.4 309 46.3
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 3.9e-62 242.7 271 50.2
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 8.6e-62 241.5 222 56.3
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.5e-61 240.7 305 45.9
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.3e-61 239.6 271 50.2
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 3.3e-61 239.6 279 52.0
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.2e-60 237.7 304 46.4
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 6.2e-60 235.3 319 45.8
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 6.2e-60 235.3 225 55.6
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 8.1e-60 235.0 314 46.2
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 3.1e-59 233.0 275 49.8
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 7.5e-58 228.4 319 45.8
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 1.3e-57 227.6 312 44.9
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.3e-57 227.6 307 41.4
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 2.2e-57 226.9 312 43.3
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 4.9e-57 225.7 323 43.7
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 3.0e-54 216.5 310 41.9
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 6.6e-54 215.3 305 40.0
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 5.6e-53 212.2 287 45.6
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 2.6e-50 203.4 242 50.4
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 3.2e-48 196.4 272 41.9
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.1e-45 188.0 130 68.5
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 3.6e-44 183.0 192 52.6
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 5.2e-43 179.1 308 38.0
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.5e-42 177.6 129 60.5
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 9.9e-42 174.9 288 39.2
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 3.8e-41 172.9 222 41.9
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.9e-40 170.6 323 38.4
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 3.2e-40 169.9 247 43.3
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.7e-39 166.8 205 49.3
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.3e-38 163.7 289 38.8
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.0e-34 150.6 110 64.5
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.5e-29 133.7 275 34.5
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 7.4e-29 132.1 107 57.9
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 8.1e-28 128.6 103 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.5e-26 124.4 245 31.0
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 2.0e-26 124.0 129 48.8
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 4.2e-24 116.3 311 28.3
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 7.1e-24 115.5 251 29.9
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.1e-23 114.0 278 32.7
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 1.5e-18 97.8 65 67.7
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 1.5e-18 97.8 65 67.7
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 4.5e-18 96.3 308 29.2
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 5.8e-18 95.9 89 55.1
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.7e-15 87.0 308 26.6
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 1.5e-13 81.3 67 58.2
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.3e-12 78.2 122 48.4
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 5.0e-09 66.2 129 34.9
COL.COLO4_27076 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.4e-08 64.7 113 39.8
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 7.9e-07 58.9 152 25.0


User provided reference genes

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