Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 2.2e-188 662.1 339 100.0
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 7.0e-126 454.5 342 69.9
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 3.5e-125 452.2 350 71.7
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 1.4e-121 440.3 350 69.4
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 6.8e-121 438.0 357 66.4
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.7e-119 433.3 350 68.0
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 6.4e-119 431.4 364 65.9
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 7.0e-118 427.9 358 66.2
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 4.7e-114 415.2 348 65.8
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.9e-110 403.3 345 65.5
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 3.2e-110 402.5 344 64.0
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 4.1e-110 402.1 349 62.8
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 9.2e-110 401.0 348 65.2
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 1.6e-109 400.2 345 65.2
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 2.1e-109 399.8 348 64.4
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 3.5e-109 399.1 348 63.8
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 3.3e-107 392.5 334 64.1
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 5.6e-107 391.7 344 62.2
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 7.3e-107 391.3 357 61.3
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 8.1e-106 387.9 351 61.3
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.1e-105 386.0 351 61.8
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 3.4e-104 382.5 347 62.2
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 7.6e-104 381.3 348 61.8
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 5.4e-102 375.2 339 59.9
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 5.4e-102 375.2 325 64.9
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 5.4e-102 375.2 348 59.5
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 7.1e-102 374.8 348 59.2
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 4.6e-101 372.1 349 59.9
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 2.3e-100 369.8 296 65.5
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 6.6e-100 368.2 347 59.4
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 8.7e-100 367.9 337 58.8
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.1e-99 367.5 323 60.7
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.9e-99 366.7 345 60.0
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 1.9e-99 366.7 347 58.2
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 5.6e-99 365.2 344 59.9
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 9.6e-99 364.4 348 58.3
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 1.6e-98 363.6 348 58.3
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 2.1e-98 363.2 348 58.0
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 2.8e-98 362.8 341 59.8
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 2.8e-98 362.8 348 58.6
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 4.7e-98 362.1 354 58.5
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 6.2e-98 361.7 347 58.2
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 8.1e-98 361.3 346 56.6
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 1.1e-97 360.9 344 59.3
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.1e-97 360.9 348 58.0
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 1.8e-97 360.1 344 58.4
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.4e-97 359.8 349 57.9
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.4e-97 359.8 350 57.4
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 3.1e-97 359.4 343 58.9
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 3.1e-97 359.4 341 58.7
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 1.5e-96 357.1 342 59.9
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 3.4e-96 355.9 321 59.5
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 7.6e-96 354.8 355 56.9
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 2.9e-95 352.8 346 58.1
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 8.4e-95 351.3 334 59.3
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 4.2e-94 349.0 348 58.6
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 5.4e-94 348.6 344 56.4
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 6.0e-93 345.1 339 56.6
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 6.0e-93 345.1 352 55.1
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 2.3e-92 343.2 344 55.5
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 3.0e-92 342.8 344 55.2
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 4.3e-91 339.0 349 54.2
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 7.3e-91 338.2 353 55.2
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 9.6e-91 337.8 342 57.0
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 3.6e-90 335.9 353 53.3
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 4.8e-90 335.5 345 54.8
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 6.2e-90 335.1 341 55.4
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 3.1e-89 332.8 300 60.0
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 5.8e-88 328.6 315 59.7
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 2.2e-87 326.6 293 58.7
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 1.4e-86 323.9 330 55.8
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 7.9e-85 318.2 345 52.2
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 1.3e-84 317.4 388 48.5
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 5.1e-84 315.5 337 53.1
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 4.3e-83 312.4 315 54.9
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 8.1e-82 308.1 318 54.1
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 2.4e-81 306.6 310 53.5
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 2.4e-81 306.6 310 54.8
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 4.0e-81 305.8 337 50.4
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 9.0e-81 304.7 383 47.5
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 1.2e-80 304.3 347 50.7
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 2.0e-80 303.5 295 56.6
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 2.9e-79 299.7 298 56.0
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 3.9e-76 289.3 338 49.1
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 3.9e-76 289.3 285 51.9
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 5.8e-72 275.4 280 51.4
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 1.9e-67 260.4 348 47.1
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 4.5e-64 249.2 337 47.2
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 7.2e-62 241.9 332 43.4
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 4.6e-61 239.2 242 49.6
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 1.0e-55 221.5 203 56.7
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 3.2e-54 216.5 222 52.3
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 1.4e-52 211.1 285 46.7
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 1.4e-52 211.1 291 43.3
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 5.3e-41 172.6 142 69.0
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 1.0e-31 141.7 287 37.6
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 5.5e-30 136.0 96 66.7
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.4e-28 131.3 131 61.1
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 1.5e-27 127.9 135 53.3
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 1.7e-26 124.4 298 30.5
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 1.0e-23 115.2 304 28.6
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 8.6e-23 112.1 128 50.8
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-19 100.1 306 24.5
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 4.9e-18 96.3 122 47.5
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 5.2e-12 76.3 58 65.5
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 2.0e-11 74.3 79 45.6
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 1.7e-10 71.2 78 60.3


User provided reference genes

Program Settings