Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 0.0e+00 1468.8 997 100.0
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 0.0e+00 1133.2 947 87.4
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.5e-306 1055.0 945 82.6
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 1.3e-305 1053.1 933 83.4
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 1.4e-302 1043.1 952 81.0
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 6.8e-302 1040.8 967 78.0
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 1.2e-301 1040.0 945 82.6
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.4e-301 1038.1 932 82.4
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.3e-300 1036.6 955 79.3
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 6.3e-300 1034.2 955 80.9
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 8.3e-300 1033.9 952 80.9
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 7.0e-299 1030.8 932 82.1
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 3.8e-297 1025.0 952 80.1
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.5e-296 1023.1 952 80.6
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 1.0e-294 1016.9 952 79.4
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 3.0e-294 1015.4 953 79.2
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 4.0e-294 1015.0 991 65.6
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 4.4e-293 1011.5 952 79.8
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 6.3e-292 1007.7 945 80.3
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 1.2e-290 1003.4 952 69.0
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 8.0e-287 990.7 944 78.8
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 8.9e-286 987.3 1125 69.8
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 2.0e-285 986.1 947 79.4
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 2.9e-284 982.2 959 78.7
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 4.9e-284 981.5 958 77.5
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 2.4e-283 979.2 951 77.9
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 5.0e-281 971.5 952 77.5
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 3.6e-279 965.3 932 77.3
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.8e-278 963.0 943 77.0
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 4.0e-278 961.8 943 77.1
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 6.4e-276 954.5 947 73.6
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.4e-276 954.5 954 76.3
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.2e-274 950.3 948 66.4
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.2e-274 950.3 953 75.1
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.0e-274 949.5 960 76.4
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.0e-273 947.2 960 76.4
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.0e-273 945.7 960 76.1
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 5.0e-273 944.9 943 76.2
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-272 943.3 960 76.0
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.5e-272 942.6 954 77.0
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 5.6e-272 941.4 953 76.1
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 3.1e-270 935.6 953 76.3
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.8e-270 934.5 960 75.8
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 1.1e-267 927.2 957 75.0
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 9.2e-267 924.1 957 76.3
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 2.7e-266 922.5 952 76.4
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 6.0e-266 921.4 953 76.3
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.0e-265 920.6 932 76.1
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.3e-265 920.2 953 76.0
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.9e-265 918.7 964 70.9
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 1.9e-264 916.4 954 75.6
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 5.6e-264 914.8 953 75.1
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 2.8e-263 912.5 953 75.8
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 2.8e-263 912.5 956 75.3
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 4.7e-263 911.8 953 74.6
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 8.1e-263 911.0 739 80.4
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.1e-262 910.6 952 75.1
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.4e-262 910.2 958 72.7
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 1.4e-262 910.2 937 74.7
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.0e-262 908.7 953 74.4
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.2e-262 908.3 936 75.6
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 6.8e-262 907.9 961 74.5
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 2.0e-261 906.4 953 74.8
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 3.4e-261 905.6 932 75.4
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 5.8e-261 904.8 978 63.1
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 4.9e-260 901.7 937 72.9
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.4e-259 900.2 953 74.0
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 1.2e-258 897.1 954 64.7
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 1.6e-258 896.7 949 67.5
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 6.0e-258 894.8 957 73.1
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 7.8e-258 894.4 952 74.2
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.3e-257 893.6 953 73.8
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.1e-256 890.6 971 53.0
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 1.5e-256 890.2 992 72.0
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 9.6e-256 887.5 937 72.8
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 1.8e-254 883.2 955 67.7
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 6.8e-254 881.3 963 70.1
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 1.3e-252 877.1 939 72.2
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 6.4e-252 874.8 937 71.7
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 6.4e-252 874.8 953 73.1
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 9.3e-251 870.9 963 70.8
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 3.0e-249 865.9 954 71.6
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 2.1e-242 843.2 954 71.6
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 2.1e-242 843.2 954 71.7
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 2.3e-241 839.7 954 71.5
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.5e-240 836.3 955 72.5
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 2.8e-239 832.8 954 71.2
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 2.4e-238 829.7 954 71.1
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.2e-237 827.4 953 71.4
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 2.0e-237 826.6 960 71.0
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 8.4e-236 821.2 957 71.3
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 8.4e-236 821.2 885 74.0
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 5.5e-235 818.5 972 67.3
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.9e-232 810.1 956 70.6
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 2.8e-231 806.2 819 79.4
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 1.0e-228 797.7 953 68.9
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 4.9e-228 795.4 952 70.7
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 1.3e-220 770.8 866 74.2
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.7e-220 770.4 954 65.9
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 6.3e-215 751.9 1023 60.7
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 2.6e-213 746.5 940 67.9
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 4.1e-198 696.0 923 63.3
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 3.7e-191 672.9 949 56.4
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.5e-187 661.0 872 65.9
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.7e-183 647.5 709 67.8
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 2.7e-173 613.6 948 59.5
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 5.7e-168 595.9 954 58.9
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.4e-167 592.4 958 57.4
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.4e-167 592.4 958 57.4
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 2.7e-157 560.5 949 56.9
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 5.6e-155 552.7 992 58.0
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.3e-130 471.9 648 46.3
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.7e-125 454.1 598 63.7
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 1.3e-111 408.7 591 43.5
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 6.0e-109 399.8 937 49.6
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 5.3e-105 386.7 332 60.2
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 1.9e-102 378.3 951 43.5
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 1.1e-73 282.7 761 41.9
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.7e-53 214.2 183 62.8
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 5.9e-48 197.2 135 68.9
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.1e-45 188.7 127 70.1
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 3.7e-42 177.9 123 67.5
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.9e-38 165.6 123 65.9
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 6.8e-36 157.1 188 48.9
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 3.4e-35 154.8 126 63.5
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.9e-34 151.8 129 59.7
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 2.5e-30 138.7 137 53.3
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.1e-25 123.2 84 72.6
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 1.0e-23 116.7 79 73.4
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.3e-22 111.7 88 56.8
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.2e-19 103.2 80 61.2
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 1.5e-19 102.8 74 74.3
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 4.4e-19 101.3 89 61.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 9.9e-19 100.1 66 75.8
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 6.4e-18 97.4 82 64.6
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.1e-14 86.7 73 67.1
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.7e-10 72.8 52 71.2
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 1.0e-07 63.5 72 50.0
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.0e-07 63.5 103 45.6
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 3.9e-07 61.6 146 28.1
HPP92_016030 Vanilla planifolia HOM05D000526 ORTHO05D000956 6.7e-07 60.8 163 27.0
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 8.7e-07 60.5 60 56.7
HPP92_015469 Vanilla planifolia HOM05D000526 ORTHO05D000956 1.5e-06 59.7 163 25.2
CANSAT01G0098 Cannabis sativa HOM05D000526 ORTHO05D000956 1.9e-06 59.3 161 26.1
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 2.5e-06 58.9 186 28.5
BcaNung02165 Brassica carinata HOM05D000526 ORTHO05D000956 3.3e-06 58.5 160 25.0
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 3.3e-06 58.5 160 25.0
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 3.3e-06 58.5 154 25.3
BcaB03g12808 Brassica carinata HOM05D000526 ORTHO05D000956 4.3e-06 58.2 160 25.0
BraA03t15231Z Brassica rapa HOM05D000526 ORTHO05D000956 5.6e-06 57.8 160 25.0
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 5.6e-06 57.8 183 29.0
Aqoxy2G02254 Aquilegia oxysepala HOM05D000526 ORTHO05D002053 7.4e-06 57.4 144 27.8
Os02g0700100 Oryza sativa ssp. japonica HOM05D000526 ORTHO05D000956 7.4e-06 57.4 204 23.0
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 7.4e-06 57.4 159 26.4
SEGI_20219 Sequoiadendron giganteum HOM05D000526 ORTHO05D000956 7.4e-06 57.4 274 22.6
ATR0157G001 Amborella trichopoda HOM05D000526 ORTHO05D000956 9.6e-06 57.0 146 24.0
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 9.6e-06 57.0 145 24.1
CANSAT01G1890 Cannabis sativa HOM05D000526 ORTHO05D000956 9.6e-06 57.0 161 24.8
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 9.6e-06 57.0 172 29.7
QL10p018959 Quercus lobata HOM05D000526 ORTHO05D000956 9.6e-06 57.0 176 25.0


User provided reference genes

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