Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 7.6e-106 387.1 188 100.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.9e-65 252.3 171 69.6
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.8e-65 251.9 171 68.4
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 3.2e-64 248.8 171 66.7
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.2e-64 248.4 168 66.1
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.8e-63 245.7 175 68.6
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.6e-63 245.4 177 65.5
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 6.1e-63 244.6 175 66.3
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.4e-62 243.4 172 66.9
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 2.3e-62 242.7 205 57.6
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.3e-62 242.7 173 67.1
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 2.3e-62 242.7 172 65.7
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.0e-62 242.3 172 67.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.0e-62 242.3 172 66.9
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 6.8e-62 241.1 174 64.9
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 8.8e-62 240.7 168 67.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.5e-61 240.0 168 66.1
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 2.0e-61 239.6 175 66.3
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.6e-61 239.2 172 66.9
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 3.4e-61 238.8 172 66.9
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.3e-60 236.9 171 64.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.2e-60 236.1 205 56.6
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.3e-60 234.6 168 63.7
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.3e-60 234.6 179 64.2
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.3e-60 234.6 171 64.3
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.4e-59 233.4 191 59.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.4e-59 233.4 169 65.1
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-59 233.4 169 65.1
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 3.1e-59 232.3 168 65.5
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.4e-59 231.5 169 63.9
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 7.0e-59 231.1 191 59.2
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.2e-59 230.7 169 63.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.2e-58 230.3 171 66.7
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.2e-58 230.3 171 64.3
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.0e-57 227.3 169 63.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-57 227.3 169 63.3
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.0e-57 227.3 176 64.8
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.7e-57 226.5 168 64.9
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 3.8e-57 225.3 170 62.4
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.5e-56 222.6 180 58.9
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.3e-56 222.2 167 59.3
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.3e-56 222.2 175 62.3
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 9.5e-56 220.7 172 61.0
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.8e-55 219.2 191 56.5
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 8.0e-55 217.6 162 61.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 8.0e-55 217.6 172 57.6
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 7.5e-53 211.1 180 58.3
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 7.5e-53 211.1 169 61.5
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.3e-52 210.3 167 57.5
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 2.9e-52 209.1 167 59.9
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-51 207.2 180 55.6
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.8e-51 206.5 170 57.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.8e-51 206.5 170 57.6
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-51 206.5 180 54.4
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 3.2e-51 205.7 168 59.5
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.1e-51 205.3 168 58.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.0e-50 203.0 168 57.1
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.5e-50 202.2 168 57.7
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.0e-49 200.7 164 62.2
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.3e-49 199.5 175 57.7
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 3.0e-49 199.1 160 56.9
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.0e-49 199.1 115 73.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 8.6e-49 197.6 189 54.0
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.1e-48 197.2 153 60.1
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.5e-48 196.8 168 56.5
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 3.3e-48 195.7 174 52.9
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 4.3e-48 195.3 168 56.0
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 9.5e-48 194.1 168 56.0
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.6e-47 193.4 118 75.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.6e-47 193.4 158 59.5
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.1e-47 193.0 168 56.0
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.1e-47 193.0 168 58.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 2.8e-47 192.6 152 60.5
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 4.7e-47 191.8 172 55.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 6.2e-47 191.4 168 56.0
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 8.0e-47 191.0 167 56.3
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.1e-46 190.7 154 59.7
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-46 190.3 168 54.8
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.4e-46 190.3 168 56.5
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.3e-46 189.5 174 53.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.3e-46 189.5 174 53.4
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.1e-46 189.1 168 53.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.0e-46 188.7 118 69.5
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 5.2e-46 188.3 156 59.6
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 5.2e-46 188.3 156 56.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 5.2e-46 188.3 156 56.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 5.2e-46 188.3 156 56.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 5.2e-46 188.3 156 56.4
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.2e-46 188.3 140 61.4
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 5.2e-46 188.3 129 64.3
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 5.2e-46 188.3 169 58.0
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 6.8e-46 188.0 154 58.4
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.2e-45 187.2 156 56.4
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.2e-45 187.2 156 56.4
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.2e-45 187.2 163 55.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.0e-45 186.4 171 53.2
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.0e-45 186.4 126 64.3
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.6e-45 186.0 164 54.9
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.4e-45 185.7 171 53.2
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 9.8e-45 184.1 110 73.6
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.7e-44 183.3 171 53.8
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.7e-44 183.3 154 58.4
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.2e-44 183.0 170 54.1
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.9e-44 181.8 122 65.6
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.4e-43 180.3 123 65.0
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.4e-43 180.3 126 61.9
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 5.4e-43 178.3 168 54.2
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 5.4e-43 178.3 123 64.2
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 5.4e-43 178.3 162 53.1
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 7.0e-43 177.9 171 52.6
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.2e-42 177.2 129 60.5
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.6e-42 176.8 177 49.7
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.3e-41 173.7 158 54.4
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 2.3e-41 172.9 158 53.8
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 3.0e-41 172.6 166 51.8
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.9e-41 172.2 126 61.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 6.6e-41 171.4 128 60.9
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 8.6e-41 171.0 165 52.7
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.5e-40 170.2 120 60.0
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-40 169.5 122 60.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-40 169.1 157 52.2
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.3e-40 169.1 157 52.2
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.3e-40 169.1 157 52.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.3e-40 168.7 122 61.5
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 7.3e-40 167.9 117 62.4
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 7.3e-40 167.9 158 52.5
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.4e-38 163.7 125 60.8
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.3e-38 162.9 193 43.5
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.3e-38 162.9 122 57.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 3.1e-38 162.5 136 53.7
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.9e-37 157.5 116 59.5
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.9e-35 153.3 125 54.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.4e-35 151.8 118 55.1
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.9e-33 145.6 143 49.7
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 5.1e-33 145.2 168 44.0
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.9e-32 143.3 117 53.8
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 4.3e-32 142.1 175 41.1
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.6e-31 140.2 124 52.4
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.2e-31 138.3 117 52.1
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 8.1e-31 137.9 125 52.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-30 136.3 109 54.1
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.0e-29 133.3 109 56.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 3.4e-29 132.5 117 47.0
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 7.6e-29 131.3 125 49.6
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.9e-27 126.7 96 55.2
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 5.4e-27 125.2 110 51.8
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 9.2e-27 124.4 114 51.8
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 9.2e-27 124.4 120 46.7
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 9.2e-27 124.4 105 57.1
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.5e-26 122.5 112 48.2
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.6e-26 122.1 96 55.2
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.7e-25 120.2 88 58.0
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 5.6e-24 115.2 121 46.3
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.0e-22 109.0 125 44.0
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 9.0e-22 107.8 177 37.9
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.4e-21 105.5 80 53.8
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.8e-21 105.1 105 46.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.9e-20 102.8 141 39.0
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-19 100.9 126 44.4
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 4.2e-19 99.0 155 34.2
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 5.4e-19 98.6 155 34.2
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.1e-19 98.2 75 54.7
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-18 97.4 117 45.3
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.6e-18 97.1 123 43.9
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 7.8e-18 94.7 155 32.3
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.5e-16 89.7 111 45.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 5.6e-16 88.6 121 40.5
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.3e-14 82.0 64 50.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 4.5e-13 79.0 99 42.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 3.2e-11 72.8 45 66.7
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.7e-10 69.7 41 68.3
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 1.8e-06 57.0 75 36.0


User provided reference genes

Program Settings