Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 2206.4 1160 100.0
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1658.7 1168 78.3
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1603.2 1183 74.9
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1602.4 1185 73.7
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1600.9 1171 73.5
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1584.3 1171 75.0
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1581.6 1182 72.0
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1577.0 1167 74.5
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1570.4 1182 71.7
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1563.9 1172 74.3
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1560.4 1188 71.7
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1554.3 1164 72.7
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1543.5 1172 71.2
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1542.3 1172 73.2
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1538.9 1188 72.4
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1536.2 1185 72.2
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1535.0 1172 72.9
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1527.7 1205 69.5
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1526.9 1198 69.9
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1525.4 1170 70.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1523.1 1188 71.5
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1518.8 1205 69.3
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1513.4 1170 70.8
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1512.7 1183 71.2
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1511.1 1191 71.6
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1507.7 1212 68.2
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1504.6 1171 70.3
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1504.2 1172 69.3
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1503.0 1194 70.8
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1501.9 1187 70.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1501.1 1183 71.1
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1500.0 1194 68.8
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1498.8 1188 70.8
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1492.6 1177 70.1
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1492.2 1190 71.1
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1490.7 1200 70.9
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1490.3 1168 69.7
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1489.2 1181 68.3
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1486.9 1186 70.9
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1482.6 1187 70.5
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1482.6 1187 70.5
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1482.2 1212 67.8
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1480.3 1181 68.2
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1478.0 1168 71.3
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1475.3 1178 68.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1474.1 1166 70.7
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1471.4 1170 71.1
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1470.7 1201 67.9
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1454.1 1156 70.6
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1446.8 1182 69.0
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1441.8 1178 68.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1441.8 1171 68.2
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1439.5 1184 68.4
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1432.2 1166 68.8
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1431.8 1184 68.2
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1429.8 1202 66.9
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1428.3 1163 68.7
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1424.5 1166 68.4
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1423.7 1164 68.7
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1418.7 1164 68.5
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1412.5 1173 68.5
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1184 67.6
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1405.2 1188 66.6
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1171 68.1
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1403.3 1188 67.3
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1403.3 1193 66.6
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1402.5 1136 69.0
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1402.1 1161 67.6
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1400.6 1188 67.2
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1396.3 1189 66.7
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1192 66.7
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1392.5 1190 66.7
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1392.1 1190 66.8
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1392.1 1167 66.9
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1390.6 1177 64.2
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1389.8 1193 66.9
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1385.9 1180 66.1
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1380.2 1182 66.7
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1191 66.9
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1358.2 1228 62.6
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1336.2 1188 62.1
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1331.6 1173 65.9
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1330.1 1178 63.5
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1315.4 1176 62.3
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1310.8 1197 63.6
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1296.2 1237 60.8
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1247.6 928 73.4
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1244.2 968 71.9
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1150.6 1029 64.5
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1126.7 910 68.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1077.4 1255 52.0
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1077.0 1245 51.6
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 5.1e-309 1064.7 1273 50.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.7e-302 1042.3 783 70.0
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.5e-288 994.6 1181 51.8
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.8e-269 933.3 775 65.7
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.6e-241 840.5 1411 40.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 5.9e-241 838.6 623 73.5
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 8.0e-238 828.2 624 75.3
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.1e-214 750.4 553 73.1
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.6e-214 749.6 553 73.2
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 2.8e-206 723.4 655 61.4
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 2.4e-205 720.3 553 70.0
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 8.1e-198 695.3 609 62.7
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 6.4e-187 659.1 589 62.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 3.0e-168 597.0 1191 36.0
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.9e-168 596.7 559 60.8
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.6e-166 591.3 547 60.5
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 6.7e-160 569.3 539 59.2
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.3e-139 501.9 497 60.2
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.5e-138 497.7 536 54.7
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.3e-136 491.1 428 62.4
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.7e-129 467.6 325 76.0
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.8e-128 464.9 365 69.6
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 5.4e-109 400.2 809 33.9
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 9.2e-109 399.4 465 53.8
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.4e-103 380.9 536 45.3
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.5e-103 379.8 365 60.0
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.2e-102 378.3 390 56.7
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 5.4e-93 347.1 369 52.6
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 6.0e-84 317.0 213 76.5
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 4.4e-79 300.8 1207 26.8
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 3.8e-78 297.7 423 48.5
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.2e-76 292.7 253 56.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 7.8e-76 290.0 221 70.6
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.1e-74 286.2 250 62.8
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.9e-74 285.4 241 66.0
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.7e-67 260.0 170 75.9
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 4.5e-63 247.7 179 74.9
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.6e-60 237.7 177 70.6
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.8e-57 228.4 201 62.7
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-55 223.0 360 43.1
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 3.5e-52 211.5 360 41.1
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 6.7e-51 207.2 360 40.3
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 4.3e-50 204.5 360 40.3
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.9e-45 189.1 136 75.0
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 5.5e-45 187.6 143 72.0
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-43 183.0 141 71.6
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 3.0e-43 181.8 143 70.6
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.1e-42 179.9 143 69.2
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 5.7e-42 177.6 143 69.2
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.8e-40 172.6 586 28.2
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 6.9e-40 170.6 174 60.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.2e-39 169.9 97 86.6
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.0e-38 166.8 139 68.3
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 3.8e-38 164.9 136 66.9
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 5.7e-34 151.0 129 65.1
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 7.4e-34 150.6 82 92.7
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.7e-33 149.4 141 61.7
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.2e-28 133.3 120 58.3
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 5.7e-26 124.4 173 49.7
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 9.7e-26 123.6 145 44.8
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.3e-25 123.2 72 87.5
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 3.8e-22 111.7 88 68.2
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.1e-21 110.2 88 67.0
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 2.5e-21 109.0 73 72.6
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.5e-18 99.8 73 67.1
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 9.1e-16 90.5 73 68.5
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 6.6e-06 57.8 55 58.2


User provided reference genes

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