Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.8e-40 168.7 80 100.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.4e-29 132.5 67 94.0
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.3e-11 72.0 47 76.6
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.3e-11 72.0 47 76.6
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 2.3e-11 72.0 47 74.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 3.0e-11 71.6 47 74.5
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.0e-11 71.6 47 74.5
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 3.0e-11 71.6 47 74.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 4.0e-11 71.2 50 68.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 6.7e-11 70.5 47 72.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 6.7e-11 70.5 50 72.0
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 6.7e-11 70.5 47 70.2
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 8.8e-11 70.1 47 74.5
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.1e-10 69.7 47 72.3
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.1e-10 69.7 47 72.3
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.5e-10 69.3 47 74.5
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.6e-10 68.6 47 72.3
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 2.6e-10 68.6 47 70.2
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.6e-10 68.6 47 72.3
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 70.2
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 70.2
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 72.3
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 74.5
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 70.2
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 70.2
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 70.2
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 3.3e-10 68.2 47 72.3
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 4.4e-10 67.8 47 68.1
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 4.4e-10 67.8 47 70.2
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.4e-10 67.8 47 68.1
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.4e-10 67.8 47 72.3
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 4.4e-10 67.8 47 68.1
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 72.3
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 72.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 68.1
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 68.1
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 5.7e-10 67.4 53 66.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 5.7e-10 67.4 53 67.9
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 5.7e-10 67.4 47 70.2
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 70.2
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 70.2
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 68.1
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 68.1
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 72.3
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 70.2
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 72.3
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 70.2
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 7.5e-10 67.0 62 58.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 7.5e-10 67.0 47 72.3
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 7.5e-10 67.0 51 68.6
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 9.7e-10 66.6 53 64.2
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 9.7e-10 66.6 46 69.6
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.3e-09 66.2 47 63.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.3e-09 66.2 47 70.2
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.3e-09 66.2 59 59.3
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.3e-09 66.2 47 70.2
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.3e-09 66.2 50 64.0
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 68.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 68.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 68.1
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 68.1
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 70.2
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 68.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.7e-09 65.9 46 69.6
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.7e-09 65.9 46 69.6
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 68.1
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 63.8
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-09 65.9 47 68.1
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.2e-09 65.5 46 63.0
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.2e-09 65.5 47 70.2
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 2.8e-09 65.1 47 72.3
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 2.8e-09 65.1 47 68.1
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 3.7e-09 64.7 47 66.0
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 3.7e-09 64.7 50 64.0
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.8e-09 64.3 46 67.4
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 4.8e-09 64.3 47 66.0
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 4.8e-09 64.3 47 66.0
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.8e-09 64.3 47 61.7
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 4.8e-09 64.3 47 66.0
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 66.0
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 66.0
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 68.1
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 66.0
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 59.6
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 68.1
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 68.1
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 6.3e-09 63.9 47 66.0
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 8.2e-09 63.5 46 67.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 8.2e-09 63.5 57 57.9
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.1e-08 63.2 46 69.6
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.4e-08 62.8 47 61.7
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.8e-08 62.4 47 66.0
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.8e-08 62.4 47 68.1
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.8e-08 62.4 47 66.0
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.4e-08 62.0 46 67.4
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 2.4e-08 62.0 47 63.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.4e-08 62.0 47 66.0
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 3.1e-08 61.6 47 66.0
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 5.3e-08 60.8 47 66.0
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 7.0e-08 60.5 46 67.4
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.0e-08 60.5 47 68.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.0e-08 60.5 47 68.1
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.0e-08 60.5 47 68.1
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.0e-08 60.5 47 59.6
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.0e-08 60.5 47 59.6
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 9.1e-08 60.1 47 66.0
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 9.1e-08 60.1 47 63.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 9.1e-08 60.1 47 66.0
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 9.1e-08 60.1 47 66.0
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.2e-07 59.7 47 68.1
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.2e-07 59.7 47 66.0
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.2e-07 59.7 47 66.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.2e-07 59.7 47 68.1
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 2.0e-07 58.9 65 52.3
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.0e-07 58.9 47 63.8
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.0e-07 58.9 47 63.8
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 2.7e-07 58.5 47 63.8
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 3.5e-07 58.2 61 54.1
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 3.5e-07 58.2 47 63.8
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.5e-07 57.8 47 66.0
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-06 55.8 47 63.8
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.7e-06 55.8 57 47.4
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.9e-06 55.1 47 61.7
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 2.9e-06 55.1 46 67.4
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.8e-06 54.7 47 61.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 5.0e-06 54.3 44 65.9
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.5e-06 53.5 47 51.1


User provided reference genes

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