Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.7e-149 531.6 274 100.0
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 5.5e-105 384.8 228 86.4
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 8.3e-101 370.9 228 83.8
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.1e-100 370.5 228 82.5
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 4.1e-100 368.6 228 83.3
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 7.0e-100 367.9 227 82.8
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 9.1e-100 367.5 228 81.6
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 3.5e-99 365.5 223 83.4
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 2.3e-98 362.8 223 83.0
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 3.8e-98 362.1 228 81.1
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 5.0e-98 361.7 222 81.5
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 6.5e-98 361.3 229 81.2
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 8.6e-98 360.9 225 80.0
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 1.1e-97 360.5 217 82.9
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 1.1e-97 360.5 213 84.5
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 1.5e-97 360.1 229 81.2
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 3.2e-97 359.0 226 78.8
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 5.5e-97 358.2 229 80.3
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 9.5e-97 357.5 228 78.1
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 9.5e-97 357.5 225 79.6
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 9.5e-97 357.5 226 78.8
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.6e-96 356.7 232 79.3
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 2.1e-96 356.3 209 84.2
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 6.1e-96 354.8 229 78.6
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 6.1e-96 354.8 218 82.1
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 8.0e-96 354.4 228 80.3
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.4e-95 353.6 228 78.1
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 1.8e-95 353.2 232 78.4
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 6.8e-95 351.3 227 77.1
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 8.8e-95 350.9 227 78.9
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 1.5e-94 350.1 232 78.9
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 1.5e-94 350.1 228 79.4
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 1.5e-94 350.1 229 78.2
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 1.5e-94 350.1 231 78.4
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 2.0e-94 349.7 226 78.8
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.6e-94 349.4 225 80.0
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 7.5e-94 347.8 229 78.2
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 7.5e-94 347.8 228 76.8
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 7.5e-94 347.8 228 78.5
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 7.5e-94 347.8 228 79.4
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 1.7e-93 346.7 218 78.4
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 2.2e-93 346.3 229 77.3
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 2.8e-93 345.9 229 76.9
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 2.8e-93 345.9 204 84.3
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 1.1e-92 344.0 230 77.0
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.4e-92 343.6 235 75.3
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 1.8e-92 343.2 228 76.3
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 1.8e-92 343.2 229 77.7
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.8e-92 343.2 208 82.2
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 2.4e-92 342.8 230 76.5
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 2.4e-92 342.8 202 83.2
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 2.4e-92 342.8 225 78.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 4.1e-92 342.0 228 75.9
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 7.0e-92 341.3 217 78.3
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 9.2e-92 340.9 253 70.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 9.2e-92 340.9 227 78.4
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 1.2e-91 340.5 228 76.8
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.6e-91 340.1 218 79.8
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.6e-91 340.1 222 76.6
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.6e-91 340.1 222 76.6
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.6e-91 340.1 194 85.6
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 4.5e-91 338.6 208 81.2
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 1.0e-90 337.4 215 77.7
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.3e-90 336.3 225 76.4
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 8.6e-90 334.3 205 80.0
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.9e-89 333.2 225 76.0
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 3.3e-89 332.4 227 75.3
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 5.6e-89 331.6 217 77.0
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 5.6e-89 331.6 225 76.0
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 7.3e-89 331.3 208 80.3
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 9.5e-89 330.9 228 75.0
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 3.6e-88 328.9 228 74.1
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 6.8e-87 324.7 218 76.6
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 1.5e-86 323.6 213 75.1
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 4.4e-86 322.0 220 75.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 4.4e-86 322.0 218 75.7
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 9.8e-86 320.9 209 76.1
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 1.3e-85 320.5 229 70.3
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 1.7e-85 320.1 218 75.7
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 1.7e-85 320.1 214 76.6
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 2.2e-85 319.7 216 75.9
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 2.9e-85 319.3 217 75.6
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 3.7e-85 318.9 218 74.8
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 4.9e-85 318.5 217 71.9
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 6.4e-85 318.2 216 74.5
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 1.1e-84 317.4 224 69.2
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 1.4e-84 317.0 216 75.5
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 1.4e-84 317.0 216 75.5
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 2.7e-83 312.8 214 72.0
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 2.3e-82 309.7 196 80.1
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 2.8e-80 302.8 218 67.9
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 3.5e-75 285.8 218 66.1
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.4e-71 273.9 164 81.1
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 3.4e-70 269.2 163 80.4
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 8.3e-69 264.6 168 80.4
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 4.6e-67 258.8 203 61.6
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 3.0e-66 256.1 197 59.9
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 8.6e-66 254.6 197 64.0
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.0e-58 231.1 219 54.8
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 2.5e-57 226.5 155 74.2
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 2.5e-57 226.5 155 74.2
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 5.6e-57 225.3 147 76.2
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 9.6e-57 224.6 173 61.8
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 4.7e-56 222.2 195 62.6
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 8.1e-56 221.5 199 55.8
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 2.9e-45 186.4 229 44.5
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 9.9e-38 161.4 211 46.4
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 2.1e-35 153.7 100 69.0
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 7.9e-35 151.8 139 61.2
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 2.1e-32 143.7 95 68.4
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 3.1e-31 139.8 97 80.4
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 1.9e-28 130.6 95 70.5
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.2e-28 129.8 96 69.8
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.5e-22 110.9 70 75.7
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 7.6e-22 108.6 60 86.7
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 6.5e-21 105.5 65 78.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.2e-19 101.3 60 76.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.6e-19 100.9 60 80.0
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.3e-18 97.1 60 75.0
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.5e-14 82.8 220 25.9
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 6.5e-13 79.0 52 71.2
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 1.1e-12 78.2 208 28.8
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.8e-10 70.9 172 28.5
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.0e-10 70.1 45 80.0


User provided reference genes

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