Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001421m.g Citrus clementina HOM05D000246 ORTHO05D009140 6.5e-232 807.0 394 100.0
Atru.chr10.2369 Acer truncatum HOM05D000246 ORTHO05D009140 1.0e-123 447.6 411 59.6
Potri.013G161200 Populus trichocarpa HOM05D000246 ORTHO05D009140 1.3e-123 447.2 400 60.0
GSVIVG01024519001 Vitis vinifera HOM05D000246 ORTHO05D009140 1.2e-121 440.7 397 58.4
Manes.18G122300 Manihot esculenta HOM05D000246 ORTHO05D009140 5.7e-119 431.8 401 58.4
Prupe.6G037500 Prunus persica HOM05D000246 ORTHO05D009140 2.2e-118 429.9 404 57.4
Haze_24501 Corylus avellana HOM05D000246 ORTHO05D009140 1.1e-117 427.6 391 59.1
Duzib168G1839 Durio zibethinus HOM05D000246 ORTHO05D009140 5.3e-117 425.2 399 54.4
CiPaw.13G059300 Carya illinoinensis HOM05D000246 ORTHO05D009140 9.1e-117 424.5 403 57.3
FAN11G0500 Fragaria x ananassa HOM05D000246 ORTHO05D009140 5.9e-116 421.8 404 56.7
FAN16G3185 Fragaria x ananassa HOM05D000246 ORTHO05D009140 5.9e-116 421.8 404 56.7
QL01p023430 Quercus lobata HOM05D000246 ORTHO05D009140 2.2e-115 419.9 409 56.5
RcHm_v2.0_Chr5g0074061 Rosa chinensis HOM05D000246 ORTHO05D009140 3.8e-115 419.1 404 56.2
MD03G1046200 Malus domestica HOM05D000246 ORTHO05D009140 1.6e-113 413.7 404 56.2
TWI74G1630 Tripterygium wilfordii HOM05D000246 ORTHO05D009140 6.1e-113 411.8 399 56.9
TAR633G0607 Trochodendron aralioides HOM05D000246 ORTHO05D009140 6.9e-109 398.3 408 55.4
Lj6g0007866 Lotus japonicus HOM05D000246 ORTHO05D009140 3.6e-105 386.0 397 54.4
Rhsim13G0056800 Rhododendron simsii HOM05D000246 ORTHO05D009140 8.8e-104 381.3 396 52.5
TPR.G37358 Trifolium pratense HOM05D000246 ORTHO05D009140 2.0e-103 380.2 401 52.6
MBI15_g11744_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D009140 7.4e-103 378.3 414 50.7
Glyma.18G048900 Glycine max HOM05D000246 ORTHO05D009140 9.7e-103 377.9 391 54.7
Lalb_Chr15g0085521 Lupinus albus HOM05D000246 ORTHO05D009140 1.3e-102 377.5 390 52.3
Sc12g0000050 Simmondsia chinensis HOM05D000246 ORTHO05D009140 1.7e-102 377.1 387 53.5
CANSAT54G0602 Cannabis sativa HOM05D000246 ORTHO05D009140 2.2e-102 376.7 401 50.4
FvH4_3g41250 Fragaria vesca HOM05D000246 ORTHO05D009140 2.2e-102 376.7 356 57.6
Medtr3g063040 Medicago truncatula HOM05D000246 ORTHO05D009140 4.5e-100 369.0 401 51.1
vmacro02858 Vaccinium macrocarpon HOM05D000246 ORTHO05D009140 1.0e-99 367.9 412 50.0
Sabra13G0128900 Salix brachista HOM05D000246 ORTHO05D009140 2.9e-99 366.3 370 53.5
Psat5g146240 Pisum sativum HOM05D000246 ORTHO05D009140 5.0e-99 365.5 377 54.1
Sed0012503 Sechium edule HOM05D000246 ORTHO05D009140 1.9e-98 363.6 402 50.0
Ca_15092_v3 Cicer arietinum L. HOM05D000246 ORTHO05D009140 2.5e-98 363.2 402 51.2
arahy.Tifrunner.gnm1.ann1.32IKG8 Arachis hypogaea HOM05D000246 ORTHO05D009140 1.0e-96 357.8 388 52.3
Lj1A109T41 Lonicera japonica HOM05D000246 ORTHO05D009140 4.0e-96 355.9 398 49.7
Sopen09g012230 Solanum pennellii HOM05D000246 ORTHO05D009140 4.0e-96 355.9 396 47.7
Aqoxy5G02490 Aquilegia oxysepala HOM05D000246 ORTHO05D009140 1.2e-95 354.4 403 46.9
Oeu020449.1 Olea europaea HOM05D000246 ORTHO05D009140 2.0e-95 353.6 379 50.4
CSS0047282 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D009140 7.5e-95 351.7 396 47.5
CAN.G478.17 Capsicum annuum HOM05D000246 ORTHO05D009140 2.8e-94 349.7 400 46.8
Nitab4.5_0000539g0090 Nicotiana tabacum HOM05D000246 ORTHO05D009140 3.7e-94 349.4 398 48.2
EL10Ac4g08390 Beta vulgaris HOM05D000246 ORTHO05D009140 4.8e-94 349.0 391 49.9
MELO3C008833.2 Cucumis melo HOM05D000246 ORTHO05D009140 7.0e-93 345.1 405 47.4
Hund18366 Selenicereus undatus HOM05D000246 ORTHO05D009140 7.0e-93 345.1 394 49.2
Cc01_g15610 Coffea canephora HOM05D000246 ORTHO05D009140 1.2e-92 344.4 377 48.8
Phvul.006G082600 Phaseolus vulgaris HOM05D000246 ORTHO05D009140 3.5e-92 342.8 393 50.9
AUR62037584 Chenopodium quinoa HOM05D000246 ORTHO05D009140 1.7e-91 340.5 375 49.1
Solyc09g018690.4 Solanum lycopersicum HOM05D000246 ORTHO05D009140 8.5e-91 338.2 397 47.4
Peaxi162Scf00293g00723 Petunia axillaris HOM05D000246 ORTHO05D009140 2.5e-90 336.7 416 44.0
arahy.Tifrunner.gnm1.ann1.KDY275 Arachis hypogaea HOM05D000246 ORTHO05D009140 4.2e-90 335.9 375 50.9
CsaV3_4G012090 Cucumis sativus L. HOM05D000246 ORTHO05D009140 1.4e-88 330.9 402 46.5
Nitab4.5_0002399g0090 Nicotiana tabacum HOM05D000246 ORTHO05D009140 1.2e-87 327.8 391 47.8
Ah.04g164140 Amaranthus hybridus HOM05D000246 ORTHO05D009140 7.5e-87 325.1 405 46.9
DCAR_004785 Daucus carota HOM05D000246 ORTHO05D009140 3.1e-85 319.7 383 46.0
HanXRQChr01g0013541 Helianthus annuus HOM05D000246 ORTHO05D009140 1.2e-84 317.8 386 46.9
Migut.D00789 Erythranthe guttata HOM05D000246 ORTHO05D009140 1.5e-82 310.8 382 45.8
Actinidia11642 Actinidia chinensis HOM05D000246 ORTHO05D009140 2.5e-82 310.1 249 61.4
ECA248G0782 Erigeron canadensis HOM05D000246 ORTHO05D009140 4.2e-82 309.3 384 47.1
ATR1127G158 Amborella trichopoda HOM05D000246 ORTHO05D009140 1.2e-81 307.8 406 44.1
SGA_v2.0_scaffold158G37464 Striga asiatica HOM05D000246 ORTHO05D009140 1.6e-81 307.4 372 46.0
MSTRG.18522 Avicennia marina HOM05D000246 ORTHO05D009140 3.4e-79 299.7 352 46.3
MELO3C008825.2 Cucumis melo HOM05D000246 ORTHO05D009140 1.3e-75 287.7 257 55.3
Glyma.11G201900 Glycine max HOM05D000246 ORTHO05D009140 1.7e-75 287.3 217 67.7
ClCG04G005480 Citrullus lanatus HOM05D000246 ORTHO05D009140 1.9e-74 283.9 438 40.6
SEGI_37344 Sequoiadendron giganteum HOM05D000246 ORTHO05D009140 2.5e-74 283.5 400 39.8
HPP92_014358 Vanilla planifolia HOM05D000246 ORTHO05D009140 6.8e-72 275.4 390 39.2
CsaV3_4G012100 Cucumis sativus L. HOM05D000246 ORTHO05D009140 1.7e-70 270.8 244 54.9
VMungo0540G2472 Vigna mungo HOM05D000246 ORTHO05D009140 9.2e-69 265.0 217 63.6
TPR.G37336 Trifolium pratense HOM05D000246 ORTHO05D009140 3.0e-67 260.0 319 47.3
Lsat_1_v5_gn_5_176881 Lactuca sativa HOM05D000246 ORTHO05D009140 8.6e-67 258.5 361 42.1
Zm00001eb330800 Zea mays HOM05D000246 ORTHO05D009140 9.5e-66 255.0 405 39.5
Os07g0681600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D009140 1.1e-64 251.5 398 36.9
PGSC0003DMG402025422 Solanum tuberosum HOM05D000246 ORTHO05D009140 6.0e-52 209.1 261 42.9
Mapoly0130s0046 Marchantia polymorpha HOM05D000246 ORTHO05D009140 3.9e-51 206.5 282 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2819 Anthoceros agrestis HOM05D000246 ORTHO05D009140 2.5e-50 203.8 386 34.2
Pp3c12_1610 Physcomitrium patens HOM05D000246 ORTHO05D009140 2.5e-50 203.8 263 40.7
MD11G1048500 Malus domestica HOM05D000246 ORTHO05D009140 4.3e-50 203.0 220 49.5
SMO367G0949 Selaginella moellendorffii HOM05D000246 ORTHO05D009140 4.0e-48 196.4 362 32.3
VMungo0540G0783 Vigna mungo HOM05D000246 ORTHO05D009140 4.3e-42 176.4 208 49.5
CBR_g39230 Chara braunii HOM05D000246 ORTHO05D009140 9.6e-34 148.7 213 39.9
Atru.chr10.2371 Acer truncatum HOM05D000246 ORTHO05D009140 2.5e-26 124.0 177 44.6
Dinv17919 Davidia involucrata HOM05D000246 ORTHO05D009140 1.5e-23 114.8 112 58.9
SGA_v2.0_scaffold158G37461 Striga asiatica HOM05D000246 ORTHO05D009140 4.2e-21 106.7 87 58.6
FvH4_4g07250 Fragaria vesca HOM05D002724 ORTHO05D002995 1.5e-18 98.2 89 59.6
FAN12G4280 Fragaria x ananassa HOM05D000289 ORTHO05D209272 4.0e-16 90.1 104 52.9
CsaV3_4G012070 Cucumis sativus L. HOM05D000246 ORTHO05D172834 3.0e-11 73.9 69 53.6
MD11G1048600 Malus domestica HOM05D000246 ORTHO05D009140 2.0e-07 61.2 48 66.7
Sabra19G0129500 Salix brachista HOM05D000246 ORTHO05D349115 1.3e-06 58.5 90 41.1


User provided reference genes

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