Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.2e-164 584.3 329 100.0
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 4.9e-113 412.9 332 66.3
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 3.0e-110 403.7 332 68.1
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 8.6e-110 402.1 333 67.9
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 8.6e-110 402.1 329 68.7
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 5.2e-107 392.9 335 68.7
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 8.9e-107 392.1 332 66.0
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.4e-106 390.2 335 68.4
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 5.8e-106 389.4 335 69.6
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 1.7e-105 387.9 325 63.7
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.9e-105 387.1 334 69.8
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 1.7e-102 377.9 329 64.7
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 1.7e-102 377.9 334 65.3
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 6.6e-102 375.9 359 59.9
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.5e-101 374.8 252 74.6
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.5e-101 374.8 252 74.6
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 1.5e-101 374.8 347 59.9
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 7.3e-101 372.5 352 60.5
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 7.3e-101 372.5 336 61.0
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 6.2e-100 369.4 335 59.7
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.1e-99 368.6 327 61.2
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 2.4e-99 367.5 331 62.2
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 6.8e-99 365.9 258 72.9
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 6.8e-99 365.9 337 60.5
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.5e-98 364.8 329 62.3
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 2.6e-98 364.0 311 64.0
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.3e-97 361.7 328 61.6
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.3e-97 361.7 328 61.6
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.7e-97 361.3 331 59.8
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 4.9e-97 359.8 329 61.1
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 8.4e-97 359.0 335 59.7
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 8.4e-97 359.0 256 72.7
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 1.4e-96 358.2 256 71.5
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.9e-96 357.8 331 61.9
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 1.9e-96 357.8 251 72.9
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 4.1e-96 356.7 327 60.9
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 5.4e-96 356.3 257 71.6
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 2.1e-95 354.4 327 61.5
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 3.0e-94 350.5 328 61.6
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 8.7e-94 349.0 255 71.8
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.5e-93 348.2 326 60.1
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.5e-93 347.4 326 60.4
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 4.3e-93 346.7 315 62.5
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 7.3e-93 345.9 322 60.6
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 7.3e-93 345.9 326 60.1
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 9.6e-93 345.5 317 61.5
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 2.1e-92 344.4 248 71.4
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 2.8e-92 344.0 334 61.4
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 3.6e-92 343.6 337 59.9
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 3.6e-92 343.6 249 72.3
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 4.7e-92 343.2 319 63.3
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.1e-91 342.0 233 74.7
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.4e-91 341.7 313 61.3
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.4e-91 341.7 241 72.2
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.8e-91 341.3 321 66.4
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 3.1e-91 340.5 264 68.2
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 6.9e-91 339.3 316 62.0
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.5e-90 338.2 251 70.9
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 2.0e-90 337.8 255 68.6
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 4.4e-90 336.7 253 69.2
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 5.8e-90 336.3 241 71.8
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.3e-89 335.1 339 59.0
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 2.2e-89 334.3 255 67.5
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 4.9e-89 333.2 258 67.1
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 1.4e-88 331.6 315 61.6
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 1.4e-88 331.6 255 66.3
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.9e-88 331.3 329 58.1
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.9e-88 331.3 248 66.9
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 3.2e-88 330.5 255 67.1
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 4.2e-88 330.1 235 72.3
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 1.2e-87 328.6 233 73.0
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 1.6e-87 328.2 334 56.6
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 2.7e-87 327.4 329 56.2
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 3.5e-87 327.0 319 58.6
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 6.0e-87 326.2 289 63.0
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 6.0e-87 326.2 330 57.0
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 1.0e-86 325.5 232 73.3
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 5.1e-86 323.2 314 58.6
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 5.1e-86 323.2 315 65.1
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 5.1e-86 323.2 315 59.0
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 5.1e-86 323.2 314 58.6
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 5.1e-86 323.2 314 58.6
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 5.1e-86 323.2 315 59.0
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 7.3e-85 319.3 242 70.2
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 2.8e-84 317.4 235 71.1
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 4.8e-84 316.6 240 70.0
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 6.2e-84 316.2 241 66.8
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 1.8e-83 314.7 240 69.6
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 4.0e-83 313.5 251 64.5
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 4.5e-82 310.1 240 67.9
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 1.9e-80 304.7 236 66.5
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 6.0e-79 299.7 252 62.3
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 4.3e-77 293.5 239 64.9
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 5.6e-77 293.1 242 66.1
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.3e-76 292.0 249 63.1
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.8e-76 290.8 331 52.3
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 3.4e-74 283.9 252 58.3
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.4e-72 278.5 252 56.7
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 2.5e-69 267.7 174 77.6
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 4.5e-58 230.3 168 72.6
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.7e-55 221.1 159 68.6
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 5.3e-51 206.8 332 42.8
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 1.5e-42 178.7 245 44.1
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 4.2e-40 170.6 218 44.0
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 7.7e-34 149.8 184 46.2
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.2e-31 142.5 246 36.6
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 1.8e-27 128.6 257 35.0
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 4.7e-23 114.0 171 33.9
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.3e-22 111.7 251 32.7
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 5.7e-21 107.1 190 34.7
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.4e-19 102.4 78 66.7
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 2.7e-10 71.6 233 27.5
Actinidia15160 Actinidia chinensis HOM05D000001 ORTHO05D000003 6.8e-06 57.0 213 25.4


User provided reference genes

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