Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 9.2e-184 646.7 324 100.0
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.2e-160 568.2 324 88.0
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 1.1e-144 516.9 306 85.3
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 7.4e-141 504.2 363 73.3
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.2e-138 496.9 324 78.4
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.4e-136 490.0 323 76.8
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 2.5e-133 479.2 324 75.6
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 4.3e-133 478.4 324 74.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 5.7e-133 478.0 324 75.0
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 8.2e-132 474.2 324 76.2
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.2e-130 470.3 324 75.3
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.6e-130 469.2 324 75.3
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 5.9e-130 468.0 324 75.6
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 7.7e-130 467.6 324 73.1
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 5.0e-129 464.9 329 74.8
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 5.0e-129 464.9 324 72.2
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 5.0e-129 464.9 324 74.7
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 1.4e-128 463.4 325 73.2
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 2.5e-128 462.6 324 74.7
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 5.5e-128 461.5 324 75.0
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 9.4e-128 460.7 313 74.4
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.6e-127 459.9 324 74.1
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 2.1e-127 459.5 324 72.8
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 6.1e-127 458.0 322 74.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 3.9e-126 455.3 314 73.2
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 5.1e-126 454.9 324 74.7
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 6.7e-126 454.5 328 71.3
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 6.7e-126 454.5 324 73.8
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 8.8e-126 454.1 325 70.8
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.0e-125 453.0 318 74.8
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.0e-125 453.0 318 74.8
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.3e-125 452.2 329 72.0
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 7.4e-125 451.1 324 72.8
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 7.0e-123 444.5 318 74.2
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 1.2e-122 443.7 316 73.7
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.5e-122 443.4 318 73.0
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 2.6e-122 442.6 321 68.8
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 3.5e-122 442.2 322 72.7
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 3.5e-122 442.2 321 68.8
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.0e-121 440.7 306 72.5
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 2.2e-121 439.5 321 69.2
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 3.8e-121 438.7 318 72.6
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 2.5e-120 436.0 337 68.8
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.7e-119 432.6 324 71.0
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.0e-118 430.6 311 68.8
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.5e-117 426.8 321 67.0
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.5e-117 426.8 306 69.9
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 2.0e-117 426.4 365 66.3
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 2.0e-117 426.4 318 71.7
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 4.8e-116 421.8 324 68.2
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 3.1e-115 419.1 319 68.7
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 5.3e-115 418.3 309 69.3
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 2.6e-114 416.0 322 68.9
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 5.9e-114 414.8 322 68.9
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 3.8e-113 412.1 321 67.9
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 6.5e-113 411.4 325 66.5
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.1e-112 410.6 325 65.8
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.1e-112 410.6 324 66.7
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.5e-112 409.5 326 64.4
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 2.1e-111 406.4 321 67.3
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 4.7e-111 405.2 324 63.9
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.4e-110 403.7 324 65.1
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 2.3e-110 402.9 302 68.5
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.5e-109 400.2 301 68.1
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.0e-109 399.8 322 64.3
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 4.4e-109 398.7 329 64.1
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 4.4e-109 398.7 309 69.6
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 4.4e-109 398.7 303 69.3
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 7.5e-109 397.9 295 69.8
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.3e-108 397.1 319 66.8
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.1e-107 394.0 298 68.8
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.4e-107 393.7 325 63.1
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 2.4e-107 392.9 298 69.1
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 4.1e-107 392.1 295 69.5
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 5.3e-107 391.7 296 69.3
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 5.9e-106 388.3 318 65.4
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.7e-105 386.7 295 68.5
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 5.0e-105 385.2 289 70.2
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 5.0e-105 385.2 327 63.6
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 8.5e-105 384.4 295 68.1
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 1.9e-104 383.3 298 68.5
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 3.2e-104 382.5 297 66.3
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 3.6e-103 379.0 298 67.1
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 4.7e-103 378.6 295 66.4
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.5e-101 373.6 288 68.1
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-100 370.5 301 64.1
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.3e-100 370.5 307 63.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 1.3e-100 370.5 315 62.5
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.7e-100 369.0 310 63.2
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.8e-99 366.7 317 61.8
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 7.0e-99 364.8 302 62.9
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.3e-97 360.5 327 60.6
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 1.4e-94 350.5 272 65.4
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.3e-92 344.0 313 59.1
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.4e-91 340.5 356 54.8
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.7e-90 336.3 378 50.3
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.0e-89 334.3 340 54.4
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 8.6e-89 331.3 346 54.0
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 8.6e-89 331.3 339 53.1
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 2.5e-88 329.7 301 59.5
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.6e-87 327.0 326 54.6
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 4.0e-86 322.4 245 71.4
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 5.0e-81 305.4 224 71.4
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.1e-78 297.7 222 70.3
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 3.2e-75 286.2 328 48.2
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 5.6e-72 275.4 198 73.7
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.1e-67 261.2 227 62.1
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.9e-64 250.4 303 47.9
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.2e-63 247.7 204 67.6
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 6.2e-63 245.4 323 45.2
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.8e-60 236.1 153 73.2
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 3.5e-58 229.6 228 57.5
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 3.3e-56 223.0 341 41.3
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 5.6e-40 169.1 124 68.5
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 4.1e-30 136.3 175 51.4
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 3.4e-29 133.3 96 64.6
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.4e-29 133.3 299 34.1
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 7.6e-29 132.1 346 28.3
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.7e-28 131.0 95 64.2
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.1e-27 128.3 80 78.8
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.1e-27 128.3 80 78.8
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 3.5e-26 123.2 351 29.9
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 4.1e-22 109.8 68 76.5
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 4.6e-18 96.3 86 60.5
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 7.9e-18 95.5 52 82.7
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.7e-15 87.8 82 59.8
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 3.7e-15 86.7 82 58.5
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 3.7e-15 86.7 82 58.5
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 2.4e-14 84.0 79 59.5
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 6.9e-14 82.4 103 46.6
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.4e-11 74.7 64 60.9
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.5e-11 73.9 48 68.8
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.4e-06 58.2 59 54.2
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 4.1e-06 56.6 99 31.3


User provided reference genes

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