Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.0e-235 819.7 426 100.0
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 8.9e-227 790.0 425 96.5
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 7.1e-208 727.2 425 89.4
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 3.1e-203 711.8 425 86.4
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 9.6e-189 663.7 425 78.4
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.0e-186 656.0 425 78.4
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 2.0e-186 656.0 425 77.9
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.9e-185 652.1 425 77.2
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 4.9e-185 651.4 425 76.7
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 4.9e-185 651.4 425 79.3
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 8.4e-185 650.6 427 76.8
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.9e-184 649.4 429 76.5
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.4e-184 649.0 425 77.9
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.2e-183 646.7 426 76.8
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 3.5e-183 645.2 426 76.5
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 3.5e-183 645.2 425 76.7
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 4.6e-183 644.8 425 77.6
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 7.9e-183 644.0 425 77.2
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 2.3e-182 642.5 425 75.8
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 3.0e-182 642.1 427 76.6
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.9e-182 641.7 425 76.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 3.9e-182 641.7 427 76.1
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 6.7e-182 641.0 425 76.7
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 6.7e-182 641.0 425 77.2
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 8.7e-182 640.6 425 76.5
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.5e-181 639.8 428 75.7
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.5e-181 639.0 425 77.4
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 2.5e-181 639.0 425 77.6
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 3.3e-181 638.6 425 76.0
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 3.3e-181 638.6 425 77.2
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 4.3e-181 638.3 425 75.3
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 4.3e-181 638.3 425 74.1
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 4.3e-181 638.3 425 76.5
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 7.4e-181 637.5 425 75.3
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 9.6e-181 637.1 425 76.2
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 1.3e-180 636.7 425 74.8
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.3e-180 636.7 425 76.9
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.8e-180 635.6 425 77.2
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 3.7e-180 635.2 426 76.1
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 8.1e-180 634.0 425 76.2
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 8.1e-180 634.0 425 74.6
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 8.1e-180 634.0 425 75.8
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.4e-179 633.3 425 74.4
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 1.4e-179 633.3 438 74.7
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.8e-179 632.9 425 76.2
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.8e-179 632.9 425 76.2
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 2.4e-179 632.5 425 74.6
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 3.1e-179 632.1 438 74.2
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 5.3e-179 631.3 425 75.8
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 1.2e-178 630.2 426 75.8
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.5e-178 629.8 425 73.6
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.5e-178 629.8 438 74.7
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.6e-178 629.0 425 75.5
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.6e-178 629.0 438 74.4
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.6e-178 629.0 438 74.2
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 3.4e-178 628.6 425 74.8
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.4e-178 628.6 425 74.1
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 7.6e-178 627.5 425 74.1
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 2.9e-177 625.5 425 74.1
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 2.9e-177 625.5 448 71.2
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.8e-177 625.2 425 73.6
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 4.9e-177 624.8 425 75.1
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 6.4e-177 624.4 425 74.1
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.1e-176 623.6 440 74.3
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 1.4e-176 623.2 425 73.2
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.4e-176 622.5 431 74.2
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 3.5e-175 618.6 426 73.5
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 7.9e-175 617.5 437 73.2
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 1.8e-174 616.3 426 72.8
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 1.9e-173 612.8 426 73.5
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 2.5e-173 612.5 426 72.8
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 2.5e-173 612.5 466 69.1
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 3.3e-173 612.1 427 73.3
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 5.6e-173 611.3 426 72.5
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 5.6e-173 611.3 426 72.5
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.3e-172 610.1 426 72.5
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 2.8e-172 609.0 425 71.3
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 2.8e-172 609.0 427 72.6
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 4.8e-172 608.2 428 72.9
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.4e-171 606.7 449 71.5
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 2.4e-171 605.9 421 73.4
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.0e-170 602.8 435 70.8
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 5.8e-170 601.3 404 74.5
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.0e-169 600.5 436 70.6
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.0e-169 600.5 425 71.5
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.3e-169 600.1 425 71.5
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 6.5e-169 597.8 427 72.1
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.1e-168 597.0 425 71.8
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.1e-165 587.0 425 72.0
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.5e-165 586.6 425 69.9
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.3e-165 585.5 425 69.9
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 9.7e-165 583.9 429 69.9
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 4.8e-164 581.6 426 70.4
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 4.8e-164 581.6 427 69.8
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 6.3e-164 581.3 409 71.6
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.4e-163 580.1 346 87.6
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.8e-163 579.7 407 72.0
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.4e-163 579.3 411 74.2
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.7e-161 573.2 427 68.9
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.2e-161 572.8 427 68.6
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.4e-160 570.1 425 69.9
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 5.1e-158 561.6 425 67.3
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 1.5e-157 560.1 425 70.8
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 2.5e-157 559.3 372 75.5
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.5e-157 559.3 426 67.6
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 4.8e-156 555.1 426 67.1
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 6.3e-156 554.7 426 66.7
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.5e-154 550.1 643 51.8
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.0e-153 547.4 425 67.5
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.3e-153 547.0 425 67.8
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 6.5e-153 544.7 426 65.3
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 7.0e-147 524.6 355 74.6
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 4.5e-146 521.9 417 65.2
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.4e-142 510.4 354 74.0
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 4.5e-138 495.4 436 58.7
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 8.8e-134 481.1 406 63.5
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.5e-133 478.0 358 70.1
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 2.2e-129 466.5 425 60.7
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 2.2e-124 449.9 436 56.7
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.0e-123 444.9 337 68.0
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 3.4e-117 426.0 273 79.1
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 4.3e-112 409.1 415 52.0
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.0e-110 404.4 398 58.8
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.3e-104 382.5 396 55.1
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.3e-104 381.7 257 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.8e-102 377.1 292 65.4
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-100 370.9 274 68.6
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.1e-98 363.6 426 47.2
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 4.6e-98 362.5 224 87.9
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 1.0e-97 361.3 221 89.6
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 1.5e-96 357.5 438 45.2
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 1.7e-92 344.0 353 54.4
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.2e-83 313.2 190 78.4
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.8e-79 300.1 492 42.5
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.7e-76 290.8 218 69.7
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.1e-75 288.1 235 65.5
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 1.4e-75 287.7 153 92.2
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 1.9e-75 287.3 153 91.5
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.3e-75 285.0 167 83.2
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.2e-74 284.6 235 65.1
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.8e-74 282.0 176 76.1
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.9e-73 279.6 176 76.1
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 6.6e-73 278.9 176 75.6
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.6e-71 273.1 186 74.7
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-67 261.5 198 68.2
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.2e-67 260.0 153 80.4
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.0e-60 238.4 236 57.2
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 9.6e-56 221.9 253 49.0
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.6e-50 204.5 120 80.8
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.6e-50 203.0 231 51.9
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 6.7e-49 199.1 130 76.9
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.6e-37 160.6 285 38.2
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.8e-33 147.9 168 53.0
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 3.1e-30 137.1 83 81.9
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 2.1e-26 124.4 149 50.3
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 1.0e-25 122.1 71 87.3
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 1.4e-25 121.7 117 59.0
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.7e-25 119.4 127 51.2
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 4.8e-23 113.2 65 81.5
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.2e-19 100.5 90 60.0
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.1e-10 71.2 91 46.2
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.7e-10 70.9 90 47.8
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 6.1e-10 69.7 38 81.6
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 3.0e-09 67.4 45 75.6
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 3.0e-09 67.4 45 75.6
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 1.5e-08 65.1 48 72.9
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 9.8e-08 62.4 48 68.8
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 9.8e-08 62.4 48 68.8
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 1.7e-07 61.6 48 68.8
A05p14630 Brassica napus HOM05D015232 ORTHO05D015515 6.3e-07 59.7 55 63.6
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 8.3e-07 59.3 44 56.8
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 1.8e-06 58.2 43 58.1
Lsat_1_v5_gn_1_100681 Lactuca sativa HOM05D003829 ORTHO05D228871 3.1e-06 57.4 34 76.5
BolC5t30108H Brassica oleracea HOM05D003829 ORTHO05D028154 4.1e-06 57.0 49 61.2


User provided reference genes

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