Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.9e-299 1031.2 539 100.0
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 7.7e-260 900.2 539 86.5
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 8.0e-257 890.2 537 86.4
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 4.5e-236 821.2 540 78.3
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 9.8e-231 803.5 540 76.1
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.9e-230 802.0 539 76.1
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 2.7e-228 795.4 540 76.7
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 4.6e-228 794.7 542 75.1
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 7.8e-228 793.9 538 76.0
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 7.8e-228 793.9 538 76.2
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 7.8e-228 793.9 540 76.1
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.7e-227 792.7 538 76.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 4.0e-224 781.6 538 74.5
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 6.8e-224 780.8 540 74.6
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.0e-223 779.2 541 74.5
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 3.4e-223 778.5 544 75.4
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.4e-222 774.2 542 74.5
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.2e-221 771.9 541 73.2
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.6e-220 768.1 537 74.9
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 6.0e-220 767.7 540 74.3
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.0e-219 766.9 538 73.6
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.0e-219 764.6 538 73.4
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.5e-218 762.3 541 75.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-217 759.6 537 74.3
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.1e-217 759.2 533 74.1
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.2e-217 757.7 542 72.9
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.8e-216 756.1 541 71.5
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.8e-216 754.2 530 73.6
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.5e-215 753.1 555 70.6
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.0e-215 752.7 537 73.9
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.0e-215 752.7 549 70.5
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.6e-215 752.3 541 72.8
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.7e-214 748.4 506 76.9
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.1e-212 742.7 556 70.1
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 6.0e-212 741.1 541 71.9
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.0e-211 740.3 531 72.1
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.7e-211 739.6 574 69.3
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.1e-210 736.9 542 71.4
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 8.1e-209 730.7 544 70.2
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.6e-207 725.7 555 68.6
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 7.6e-207 724.2 542 70.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-206 721.8 549 70.9
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 6.4e-206 721.1 544 70.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 6.4e-206 721.1 562 68.1
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.0e-203 713.8 471 79.0
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.1e-202 710.3 504 72.4
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.5e-202 709.9 541 69.1
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 3.3e-202 708.8 546 69.0
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.6e-201 705.3 491 73.5
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.2e-201 704.5 575 66.4
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.8e-200 703.0 546 68.9
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 4.0e-200 701.8 540 67.8
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 3.4e-199 698.7 527 72.1
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.2e-198 696.0 545 67.5
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 6.4e-198 694.5 538 67.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.1e-197 693.7 542 66.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 9.3e-197 690.6 543 67.2
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 9.3e-197 690.6 542 66.4
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 6.0e-196 688.0 542 65.9
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.0e-195 687.2 541 66.9
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 3.0e-195 685.6 682 56.7
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 5.1e-195 684.9 563 65.0
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 2.5e-194 682.6 541 67.7
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.6e-193 679.9 543 66.9
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.8e-193 678.3 505 70.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 4.8e-193 678.3 541 67.1
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.1e-192 677.2 543 68.1
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.8e-192 676.4 559 65.1
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 5.3e-192 674.9 543 66.3
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 3.4e-191 672.2 543 66.3
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.7e-190 669.8 586 60.8
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 4.2e-189 665.2 559 65.7
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 2.7e-188 662.5 445 78.4
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 6.0e-188 661.4 542 65.9
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.3e-187 659.4 541 64.9
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.5e-186 656.0 566 64.3
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 9.6e-186 654.1 545 64.6
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.8e-184 649.8 544 66.5
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 6.9e-184 647.9 503 68.0
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.5e-183 646.7 470 71.1
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.5e-183 646.7 556 63.3
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.3e-182 643.7 470 70.9
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.5e-181 639.4 509 65.0
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.2e-181 638.6 513 65.9
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 7.1e-181 637.9 419 76.8
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.2e-180 637.1 541 61.7
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 7.9e-180 634.4 542 63.1
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 3.9e-179 632.1 573 61.1
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 6.7e-179 631.3 564 62.1
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.5e-178 630.2 561 62.0
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 5.6e-178 628.2 566 61.5
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 7.4e-178 627.9 359 84.4
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.0e-176 622.1 540 61.1
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.2e-175 620.5 516 64.1
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.9e-173 613.2 432 72.5
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.7e-172 609.4 356 83.1
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.3e-171 606.3 539 59.9
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.4e-170 601.3 541 59.0
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 3.7e-169 599.0 564 59.8
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 4.1e-168 595.5 550 62.9
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.5e-167 593.6 342 83.6
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.7e-166 590.1 503 63.2
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.1e-165 587.4 749 47.9
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 2.5e-165 586.3 356 80.3
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.9e-163 578.9 493 63.3
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 5.1e-163 578.6 500 61.0
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.0e-162 576.6 491 62.1
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 7.4e-162 574.7 532 60.5
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 3.6e-156 555.8 409 68.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 6.1e-156 555.1 540 58.7
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 6.7e-155 551.6 504 60.3
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 7.0e-152 541.6 447 63.8
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 4.5e-151 538.9 361 73.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.6e-148 529.3 707 47.2
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 4.7e-148 528.9 381 70.1
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 6.7e-147 525.0 343 72.9
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.6e-143 513.8 417 66.4
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 6.1e-140 501.9 353 68.8
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 9.7e-138 494.6 426 61.5
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 4.7e-132 475.7 369 62.6
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.4e-131 474.2 296 78.4
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 8.8e-131 471.5 519 52.2
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-130 470.7 322 73.9
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 2.2e-129 466.8 374 64.7
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.7e-127 459.9 528 51.9
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-124 451.1 435 53.8
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 2.8e-124 449.9 275 80.4
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.9e-123 444.9 355 69.3
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.9e-117 427.2 477 50.7
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.6e-116 422.9 438 52.5
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 9.8e-114 414.8 440 50.7
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.9e-112 410.6 539 45.3
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.7e-110 404.1 458 50.0
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 6.6e-110 402.1 389 59.6
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.1e-109 401.4 411 53.5
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-105 387.5 246 80.9
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.4e-96 357.8 365 54.2
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 4.6e-95 352.8 335 55.8
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 3.4e-90 336.7 328 57.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.3e-85 320.1 188 83.0
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.6e-82 310.5 268 61.9
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 2.4e-80 303.9 411 40.4
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 4.3e-77 293.1 197 72.6
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.4e-72 278.1 182 74.7
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 4.5e-66 256.5 415 38.1
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.5e-63 246.9 334 45.2
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 3.3e-61 240.4 325 40.6
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 8.2e-60 235.7 152 75.0
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.5e-58 231.5 187 63.6
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.6e-58 230.7 178 65.2
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.4e-56 224.9 178 74.2
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 5.3e-51 206.5 368 37.8
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.7e-47 194.1 101 93.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.9e-46 190.3 148 62.2
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 6.7e-46 189.5 257 48.6
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.1e-45 188.7 375 34.7
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 3.9e-38 163.7 85 88.2
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 6.7e-38 162.9 178 53.4
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.1e-32 145.6 177 51.4
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 1.3e-28 132.1 177 47.5
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.1e-27 129.0 177 45.2
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 2.4e-27 127.9 182 52.2
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.9e-26 123.2 176 47.2
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 7.2e-24 116.3 63 85.7
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 3.6e-23 114.0 223 38.6
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.8e-22 111.7 65 81.5
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.0e-22 110.5 182 42.9
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.8e-22 109.4 66 78.8
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 2.4e-19 101.3 65 73.8
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.2e-16 90.9 60 66.7
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 5.5e-16 90.1 168 40.5
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 7.5e-13 79.7 179 40.2
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.0e-11 73.2 73 61.6
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.0e-10 71.6 59 62.7
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.7e-10 71.2 39 92.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.0e-09 69.3 52 67.3
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.8e-09 67.4 32 87.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.0e-09 67.0 47 72.3
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.5e-08 64.7 56 62.5
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 2.8e-07 61.2 130 36.2


User provided reference genes

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