Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.6e-183 646.0 323 100.0
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 9.3e-160 567.0 324 88.0
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 4.3e-149 531.6 308 86.7
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 9.6e-149 530.4 363 76.3
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 7.6e-146 520.8 323 80.8
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 3.2e-144 515.4 323 80.2
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 5.5e-144 514.6 323 78.9
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 7.1e-144 514.2 323 79.6
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.2e-143 513.5 323 78.6
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.5e-141 506.5 323 77.1
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 2.5e-141 505.8 323 77.1
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 3.3e-141 505.4 323 78.6
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 3.3e-141 505.4 324 78.1
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 4.8e-140 501.5 323 78.6
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 6.2e-140 501.1 323 78.9
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 6.9e-139 497.7 324 75.6
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.2e-138 496.9 323 78.3
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 2.0e-138 496.1 323 77.7
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 4.5e-138 495.0 323 76.8
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.3e-137 493.4 323 78.3
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.7e-137 493.0 320 75.9
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 2.9e-137 492.3 311 78.5
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 8.4e-137 490.7 324 78.1
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 8.4e-137 490.7 324 78.1
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 1.1e-136 490.3 328 77.4
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 4.2e-136 488.4 324 77.2
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 7.1e-136 487.6 323 76.8
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 4.6e-135 485.0 321 76.9
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 1.3e-134 483.4 322 75.8
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 1.3e-134 483.4 322 77.6
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.3e-134 482.6 324 78.1
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 5.1e-134 481.5 323 76.2
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 5.1e-134 481.5 323 76.5
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.1e-133 480.3 328 74.7
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.5e-133 479.9 323 76.2
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 3.3e-133 478.8 308 76.9
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 3.3e-133 478.8 327 73.1
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.6e-132 476.5 324 76.2
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 2.8e-132 475.7 323 72.4
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 3.7e-132 475.3 320 72.5
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.1e-131 472.2 317 75.7
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 4.1e-131 471.9 323 72.1
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 4.5e-130 468.4 364 69.5
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.3e-129 466.8 313 73.2
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 6.5e-129 464.5 336 71.1
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.1e-128 463.8 308 74.4
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 4.6e-127 458.4 323 69.7
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.3e-126 456.8 323 73.7
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.3e-126 456.8 317 73.8
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 3.3e-125 452.2 324 70.7
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.7e-125 451.4 324 70.7
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 5.7e-125 451.4 323 70.9
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 2.8e-124 449.1 323 70.0
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 3.7e-124 448.7 321 72.3
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.2e-122 443.7 324 71.3
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 3.4e-122 442.2 310 71.9
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.7e-121 439.9 300 72.7
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.9e-120 436.4 322 71.1
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 2.5e-120 436.0 308 73.1
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 4.2e-120 435.3 321 70.4
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.0e-118 430.6 323 68.7
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 5.1e-118 428.3 326 68.7
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.1e-117 427.2 323 65.9
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.1e-117 427.2 301 71.4
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 5.7e-117 424.9 326 64.4
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 7.4e-117 424.5 322 69.9
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.3e-116 423.7 324 67.3
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 6.3e-116 421.4 321 65.4
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.4e-115 420.2 321 68.2
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.2e-114 417.2 294 73.1
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 5.9e-114 414.8 294 73.1
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.7e-113 413.3 293 72.4
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 4.2e-112 408.7 295 72.9
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 4.2e-112 408.7 295 72.2
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 9.4e-112 407.5 328 63.4
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.6e-111 406.8 295 71.9
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 2.1e-111 406.4 301 71.4
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 3.6e-111 405.6 297 70.7
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 7.9e-111 404.4 301 71.1
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 8.8e-110 401.0 294 70.1
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 8.8e-110 401.0 306 66.7
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.5e-109 400.2 301 67.4
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 2.0e-109 399.8 300 67.7
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 2.2e-108 396.4 293 69.3
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 4.8e-108 395.2 288 72.2
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 8.2e-108 394.4 297 67.7
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 5.3e-107 391.7 319 64.9
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.2e-106 390.6 319 64.3
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 2.0e-106 389.8 311 65.6
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 3.5e-106 389.0 301 69.4
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 5.9e-106 388.3 281 71.2
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 4.2e-104 382.1 271 70.1
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.4e-102 377.1 324 62.3
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 2.6e-101 372.9 326 60.7
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.3e-100 370.5 377 53.3
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 8.5e-97 357.8 354 55.4
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.5e-96 357.1 357 57.1
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.5e-96 357.1 341 56.3
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 1.9e-96 356.7 301 62.8
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.8e-94 350.1 325 58.2
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 6.8e-94 348.2 245 73.5
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 3.4e-93 345.9 340 56.2
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.4e-91 340.5 223 77.6
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.4e-91 340.5 221 78.3
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.9e-81 306.2 198 80.3
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.3e-76 290.8 328 47.9
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.4e-75 286.6 226 66.8
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.1e-67 261.2 306 49.7
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 8.6e-65 251.5 152 77.6
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.5e-64 250.0 227 59.9
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 2.1e-63 246.9 325 45.5
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.1e-62 244.6 203 67.0
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 3.5e-58 229.6 342 41.5
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 8.7e-41 171.8 124 70.2
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 8.1e-39 165.2 175 57.7
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.3e-31 141.4 91 70.3
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.8e-31 139.4 90 70.0
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 6.9e-30 135.6 298 33.6
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.3e-28 131.3 80 80.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.3e-28 131.3 80 80.0
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 2.9e-28 130.2 346 28.6
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 6.2e-23 112.5 68 77.9
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 2.6e-21 107.1 335 27.5
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-19 100.9 86 62.8
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 5.5e-19 99.4 82 67.1
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.2e-18 98.2 82 65.9
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.2e-18 98.2 82 65.9
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 7.9e-18 95.5 79 67.1
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.8e-17 94.4 52 78.8
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 4.1e-14 83.2 96 47.9
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 8.5e-12 75.5 306 22.9
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.9e-11 74.3 44 75.0
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 7.2e-11 72.4 64 60.9
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.9e-09 66.6 58 62.1
TPR.G25476 Trifolium pratense HOM05D000254 ORTHO05D000165 1.3e-07 61.6 116 41.4
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 2.8e-07 60.5 108 35.2
Sopen09g008640 Solanum pennellii HOM05D011435 ORTHO05D012656 2.4e-06 57.4 56 55.4


User provided reference genes

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