Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 6.9e-309 1063.1 540 100.0
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 3.3e-263 911.4 524 88.0
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 3.7e-262 907.9 522 87.4
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 6.8e-240 833.9 503 86.3
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 4.0e-224 781.6 522 74.9
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 4.1e-221 771.5 522 73.6
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 4.6e-220 768.1 522 74.1
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 4.6e-220 768.1 526 73.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 6.6e-219 764.2 522 73.6
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.1e-218 763.5 527 73.2
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 1.9e-218 762.7 526 72.6
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.9e-218 762.7 526 73.6
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 4.3e-218 761.5 526 73.8
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 4.3e-218 761.5 526 73.8
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 7.3e-218 760.8 526 74.1
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 7.3e-218 760.8 526 73.2
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 9.5e-218 760.4 526 72.1
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.2e-217 760.0 526 72.6
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.2e-217 760.0 524 73.5
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.6e-217 759.6 522 72.6
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.6e-217 759.6 526 72.2
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 2.1e-217 759.2 522 72.6
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.8e-217 758.8 526 73.0
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.1e-216 756.9 526 71.9
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.1e-216 756.9 526 73.4
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.8e-216 756.1 526 73.2
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 5.2e-216 754.6 526 72.6
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 5.2e-216 754.6 526 73.0
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 6.8e-216 754.2 526 72.6
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 6.8e-216 754.2 522 72.4
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 8.9e-216 753.8 526 71.7
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.6e-215 752.3 526 72.2
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 2.6e-215 752.3 526 72.8
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 9.9e-215 750.4 526 72.2
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.3e-214 750.0 526 70.9
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.7e-214 749.6 526 71.1
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 1.4e-213 746.5 526 71.1
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 1.9e-213 746.1 526 71.5
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 5.4e-213 744.6 526 71.3
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.1e-212 742.7 522 71.8
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 6.0e-212 741.1 522 71.3
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 5.1e-211 738.0 526 71.1
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.1e-210 736.9 526 70.0
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 1.1e-210 736.9 526 70.7
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.5e-210 736.5 575 67.3
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.5e-210 736.5 541 69.3
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.9e-210 736.1 522 71.1
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.5e-210 735.7 524 70.8
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.3e-210 735.3 526 70.0
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 4.3e-210 734.9 526 69.2
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 5.6e-210 734.6 526 70.0
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.3e-210 734.2 526 70.5
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 9.6e-210 733.8 504 72.8
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.2e-209 733.4 526 70.3
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 8.1e-209 730.7 526 70.3
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.8e-208 729.6 526 70.9
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 9.0e-208 727.2 526 69.2
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 9.0e-208 727.2 526 69.0
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 2.6e-207 725.7 526 69.4
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 3.4e-207 725.3 526 68.1
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 5.8e-207 724.5 526 68.1
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.3e-206 723.4 547 68.2
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.2e-206 722.6 505 72.7
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 8.4e-206 720.7 533 67.0
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 1.4e-205 719.9 526 68.6
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.2e-205 718.4 527 68.3
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 7.1e-205 717.6 553 66.2
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 1.2e-204 716.8 527 69.4
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.5e-204 715.3 528 68.2
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 6.6e-203 711.1 520 68.3
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.9e-202 709.5 536 67.7
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 1.3e-201 706.8 527 67.6
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 1.6e-201 706.4 526 67.3
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.1e-201 706.1 537 67.6
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 4.0e-200 701.8 527 67.7
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.5e-199 699.9 521 68.1
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 2.0e-199 699.5 538 66.2
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 5.8e-199 698.0 527 66.6
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 9.9e-199 697.2 503 70.0
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 1.3e-198 696.8 527 66.4
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 1.3e-198 696.8 527 66.4
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 1.7e-198 696.4 536 68.7
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.7e-198 696.4 521 66.6
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 2.9e-198 695.7 527 66.4
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 8.4e-198 694.1 531 66.9
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.4e-197 693.3 558 66.1
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 3.2e-197 692.2 526 67.1
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 7.9e-196 687.6 526 66.0
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.9e-195 685.3 526 66.0
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.9e-194 682.9 505 69.7
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 9.6e-194 680.6 526 66.7
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 2.8e-193 679.1 564 64.4
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 4.8e-193 678.3 535 63.9
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.1e-192 677.2 660 56.4
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.6e-191 672.5 524 66.6
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.4e-189 666.8 526 63.5
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 4.2e-189 665.2 526 65.2
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 3.9e-187 658.7 527 64.7
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 5.1e-187 658.3 524 66.6
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 6.7e-187 657.9 526 63.5
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.9e-186 656.4 379 89.4
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.8e-184 649.8 534 63.1
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.6e-183 646.0 531 62.3
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 5.8e-183 644.8 527 62.4
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.1e-178 630.6 444 70.9
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.5e-178 630.2 526 62.0
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 2.5e-178 629.4 526 60.8
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.8e-177 625.9 530 60.4
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 6.9e-176 621.3 524 61.6
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 8.5e-174 614.4 543 56.7
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 9.3e-173 610.9 530 58.5
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.1e-172 609.8 454 67.6
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.9e-165 586.6 527 58.8
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.7e-164 582.0 692 50.4
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 7.9e-164 581.3 346 87.6
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 6.9e-160 568.2 526 58.7
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 6.9e-160 568.2 487 62.2
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 1.1e-157 560.8 419 67.5
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.9e-157 560.1 408 69.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 4.1e-152 542.3 318 89.9
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 7.7e-151 538.1 444 61.7
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 7.7e-151 538.1 529 53.7
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 1.3e-150 537.3 532 52.4
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 3.3e-146 522.7 504 57.9
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 8.0e-140 501.5 534 48.7
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.0e-139 501.1 465 57.4
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 9.8e-138 494.6 411 64.2
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.2e-137 493.4 417 62.6
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 3.0e-118 429.9 758 39.3
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.5e-117 426.8 250 84.8
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 4.3e-117 426.0 528 42.2
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 9.5e-117 424.9 526 44.5
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.2e-100 369.0 297 65.3
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.2e-98 364.8 278 66.2
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.6e-92 343.2 259 66.4
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 9.0e-91 338.6 466 43.8
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.6e-87 326.2 299 59.2
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.7e-79 300.4 318 53.8
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.9e-78 296.6 187 79.7
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.0e-74 284.3 206 72.3
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.3e-69 266.9 177 73.4
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.7e-65 254.6 268 53.4
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.2e-65 254.2 271 51.3
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.7e-61 238.8 524 32.6
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.2e-56 223.4 231 55.4
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.5e-53 214.2 249 48.2
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 9.7e-53 212.2 130 81.5
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 1.4e-51 208.4 200 53.5
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 2.6e-50 204.1 201 53.2
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 9.4e-48 195.7 201 52.2
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.1e-47 193.0 144 63.2
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.8e-46 189.1 111 77.5
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.3e-45 187.2 111 80.2
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 5.5e-40 169.9 116 68.1
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 8.8e-38 162.5 97 77.3
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 2.0e-37 161.4 146 63.0
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.7e-36 158.3 97 74.2
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 3.7e-36 157.1 120 58.3
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 6.3e-36 156.4 120 59.2
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.4e-35 155.2 120 60.8
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 2.0e-34 151.4 183 50.8
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 1.1e-32 145.6 120 56.7
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 2.5e-32 144.4 120 55.8
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.2e-32 144.1 194 46.4
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 6.1e-31 139.8 75 89.3
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 6.1e-31 139.8 78 85.9
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 2.0e-29 134.8 149 52.3
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 5.7e-29 133.3 83 78.3
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.2e-25 121.3 74 74.3
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 1.5e-24 118.6 85 65.9
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 1.4e-22 112.1 66 78.8
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 5.2e-22 110.2 78 65.4
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 5.0e-17 93.6 117 44.4
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.5e-16 91.3 75 57.3
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 1.8e-14 85.1 60 66.7
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 7.0e-11 73.2 55 60.0
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 2.9e-09 67.8 62 53.2
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 5.0e-09 67.0 104 40.4
Lsat_1_v5_gn_1_100681 Lactuca sativa HOM05D003829 ORTHO05D228871 2.3e-06 58.2 35 74.3


User provided reference genes

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