Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.3e-102 375.6 186 100.0
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 7.6e-98 360.5 186 94.6
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.3e-89 333.2 184 85.9
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 7.1e-88 327.4 184 84.2
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 9.3e-88 327.0 184 85.9
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 5.3e-83 311.2 184 82.1
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 6.9e-83 310.8 184 81.5
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.0e-82 309.3 184 81.5
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 2.6e-82 308.9 184 81.5
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 2.2e-81 305.8 184 80.4
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 3.8e-81 305.1 184 79.3
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 3.8e-81 305.1 184 79.9
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 3.8e-81 305.1 184 79.9
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 4.9e-81 304.7 184 81.0
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 4.9e-81 304.7 184 79.3
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 4.9e-81 304.7 184 80.4
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 8.4e-81 303.9 184 79.3
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 8.4e-81 303.9 184 79.3
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 8.4e-81 303.9 184 77.2
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.9e-80 302.8 184 79.3
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.2e-80 302.0 184 79.3
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.2e-80 302.0 184 77.2
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 4.2e-80 301.6 184 78.8
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 5.5e-80 301.2 184 77.2
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 5.5e-80 301.2 184 78.8
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 7.1e-80 300.8 184 79.3
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.2e-79 300.1 184 78.8
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.2e-79 300.1 184 78.8
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.6e-79 299.7 184 77.2
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.6e-79 299.7 184 77.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.6e-79 299.7 184 79.3
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 2.1e-79 299.3 184 79.3
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 2.1e-79 299.3 184 77.7
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 2.1e-79 299.3 184 77.7
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.1e-79 299.3 184 79.3
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 2.7e-79 298.9 184 78.3
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 3.5e-79 298.5 184 78.3
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.5e-79 298.5 184 77.2
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 3.5e-79 298.5 184 77.2
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 6.0e-79 297.7 184 76.6
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 6.0e-79 297.7 184 78.3
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 6.0e-79 297.7 184 78.3
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 7.9e-79 297.4 184 75.5
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 7.9e-79 297.4 184 77.2
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 7.9e-79 297.4 184 77.2
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.0e-78 297.0 191 74.3
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.0e-78 297.0 184 78.8
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.0e-78 297.0 184 79.3
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.3e-78 296.6 184 76.6
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 1.3e-78 296.6 186 76.3
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.0e-78 295.4 184 77.2
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 3.0e-78 295.4 184 76.1
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.0e-78 295.4 184 78.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.9e-78 295.0 184 76.6
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.9e-78 295.0 184 76.6
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 6.7e-78 294.3 184 77.2
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 6.7e-78 294.3 184 77.7
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.9e-77 292.7 184 76.1
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.9e-77 292.7 184 76.6
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.6
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 3.3e-77 292.0 184 75.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 77.2
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 77.2
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 76.1
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 76.1
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 76.1
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 5.6e-77 291.2 184 76.1
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 5.6e-77 291.2 184 75.5
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.6e-77 291.2 184 73.4
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.6e-77 291.2 184 73.4
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 7.4e-77 290.8 184 74.5
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 7.4e-77 290.8 184 76.1
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 9.6e-77 290.4 184 73.9
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-76 290.0 184 76.6
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 1.3e-76 290.0 184 75.5
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.3e-76 290.0 184 76.6
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.3e-76 290.0 184 76.1
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 75.5
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 75.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 76.1
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 73.4
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.2e-76 287.7 184 75.0
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.4e-75 286.6 182 76.4
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 6.9e-75 284.3 184 74.5
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 9.0e-75 283.9 182 75.3
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 9.0e-75 283.9 182 75.3
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.6e-74 282.3 182 75.3
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 2.6e-74 282.3 184 73.9
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 2.6e-74 282.3 184 73.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 2.6e-74 282.3 184 73.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.6e-74 282.3 182 74.2
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.4e-74 282.0 184 72.8
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 5.8e-74 281.2 182 74.7
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 7.6e-74 280.8 184 72.3
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.0e-73 280.4 184 71.7
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.0e-73 280.4 184 71.7
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.3e-73 280.0 184 73.4
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.3e-73 280.0 184 73.4
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.3e-73 280.0 184 73.4
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.3e-73 280.0 184 73.9
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 2.2e-73 279.3 184 71.2
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.9e-73 278.9 185 72.4
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 3.8e-73 278.5 184 73.4
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.8e-73 278.5 184 73.4
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 6.5e-73 277.7 184 71.2
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 8.4e-73 277.3 183 74.9
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 3.2e-72 275.4 182 73.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 4.2e-72 275.0 182 73.6
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.5e-72 274.6 182 72.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 3.9e-70 268.5 229 60.3
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 8.7e-70 267.3 184 67.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.5e-69 265.8 184 67.9
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 4.3e-69 265.0 184 67.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.2e-68 262.7 220 61.8
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.1e-67 260.4 184 67.4
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.1e-67 260.4 184 66.3
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.8e-67 259.6 158 77.8
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 6.9e-67 257.7 185 64.9
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 1.2e-66 256.9 191 70.2
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.4e-66 255.4 184 65.8
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 3.4e-66 255.4 184 64.7
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.3e-65 253.4 184 69.6
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.2e-64 248.4 153 77.1
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 7.9e-63 244.2 158 74.1
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.4e-62 243.4 153 76.5
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 3.3e-61 238.8 186 64.5
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.7e-60 236.5 186 60.2
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 2.2e-60 236.1 184 64.7
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 5.3e-59 231.5 185 64.3
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 5.5e-56 221.5 139 77.0
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.6e-55 219.9 184 61.4
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 3.7e-52 208.8 139 70.5
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.9e-50 201.4 184 59.2
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.8e-49 198.7 178 57.9
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.4e-48 196.8 153 63.4
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-47 193.4 161 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.9e-46 188.7 153 57.5
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.6e-45 186.0 180 56.1
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.4e-43 180.3 188 45.7
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.0e-43 177.9 151 57.6
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.7e-41 173.3 103 79.6
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 5.0e-41 171.8 161 54.7
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 8.5e-41 171.0 103 77.7
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 6.1e-39 164.9 135 59.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.5e-37 160.2 101 72.3
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.3e-37 159.1 100 73.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-36 156.8 101 72.3
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 6.3e-36 154.8 105 68.6
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.7e-33 146.7 137 55.5
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.9e-33 146.0 109 63.3
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 1.2e-29 134.0 81 80.2
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 9.8e-29 131.0 76 80.3
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 4.1e-27 125.6 87 66.7
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.6e-26 123.6 81 74.1
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.2e-24 115.5 102 53.9
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 5.2e-22 108.6 109 51.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.4e-19 100.5 68 63.2
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 4.0e-14 82.4 124 43.5
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.2e-13 80.9 55 69.1
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.5e-13 80.5 109 45.9
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 1.4e-06 57.4 142 24.6
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.8e-06 57.0 124 35.5
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.8e-06 57.0 81 43.2
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 2.3e-06 56.6 107 29.9
Psat5g184520 Pisum sativum HOM05D001645 ORTHO05D001749 8.9e-06 54.7 163 27.0


User provided reference genes

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