Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G099000 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.2e-123 446.4 221 100.0
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.5e-94 348.6 250 73.2
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 7.9e-94 347.4 250 72.8
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 2.4e-90 335.9 250 70.0
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 2.4e-90 335.9 250 70.0
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 5.9e-89 331.3 212 75.9
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 2.9e-88 328.9 250 68.8
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 2.5e-87 325.9 250 67.6
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 9.3e-87 323.9 222 73.4
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 3.6e-86 322.0 250 67.2
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 3.6e-86 322.0 250 67.2
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 3.6e-86 322.0 249 66.3
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 3.6e-86 322.0 250 67.2
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 1.8e-85 319.7 249 65.5
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.8e-85 319.7 249 65.5
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.8e-85 319.7 249 65.5
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.8e-85 319.7 249 65.5
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.8e-85 319.7 249 65.5
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 2.3e-85 319.3 250 66.4
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 3.9e-85 318.5 249 65.5
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 5.1e-85 318.2 249 65.9
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 6.7e-85 317.8 249 65.9
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 6.7e-85 317.8 249 65.9
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 1.1e-84 317.0 249 65.5
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.1e-84 317.0 249 65.5
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.1e-84 317.0 249 65.5
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.5e-84 316.6 249 66.3
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.5e-84 316.6 249 65.5
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 2.5e-84 315.8 249 65.9
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 3.3e-84 315.5 251 65.3
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 4.3e-84 315.1 249 63.9
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.7e-84 314.7 249 65.9
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.7e-84 314.7 249 65.9
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 5.7e-84 314.7 249 64.7
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 7.4e-84 314.3 249 65.1
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 9.7e-84 313.9 249 65.5
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 9.7e-84 313.9 249 65.1
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.3e-83 313.5 249 65.1
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.3e-83 313.5 249 65.1
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.6e-83 313.2 249 65.1
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 1.6e-83 313.2 249 64.7
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.6e-83 313.2 249 65.1
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 2.2e-83 312.8 249 64.7
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 2.2e-83 312.8 249 64.3
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 2.2e-83 312.8 249 64.7
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 2.2e-83 312.8 250 65.2
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 2.2e-83 312.8 249 64.3
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 2.2e-83 312.8 249 64.3
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 2.8e-83 312.4 249 65.1
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 4.8e-83 311.6 249 64.3
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.8e-83 311.6 249 64.3
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.3e-83 311.2 206 73.8
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 1.1e-82 310.5 249 64.7
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.4e-82 310.1 249 64.3
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 2.4e-82 309.3 248 64.5
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 2.4e-82 309.3 248 64.5
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.4e-82 309.3 250 63.6
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 4.1e-82 308.5 249 63.1
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 1.2e-81 307.0 248 64.1
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 1.2e-81 307.0 249 63.5
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 1.5e-81 306.6 248 63.7
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 2.0e-81 306.2 248 64.1
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 2.0e-81 306.2 248 64.1
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 2.0e-81 306.2 248 64.1
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 3.4e-81 305.4 249 63.5
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 1.7e-80 303.1 248 63.7
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 5.0e-80 301.6 249 62.7
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 1.4e-79 300.1 249 63.1
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 1.4e-79 300.1 250 61.2
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 3.2e-79 298.9 250 61.2
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 3.2e-79 298.9 249 61.4
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 4.2e-79 298.5 249 62.2
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 1.2e-78 297.0 248 60.9
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 1.6e-78 296.6 250 62.0
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.1e-78 296.2 252 60.7
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.1e-78 296.2 252 60.7
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 2.1e-78 296.2 252 60.7
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 2.7e-78 295.8 249 61.4
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 2.7e-78 295.8 249 61.0
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 6.1e-78 294.7 248 61.7
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 7.9e-78 294.3 250 60.4
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.4e-77 293.5 250 61.2
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.4e-77 293.5 250 60.8
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.3e-77 292.7 250 62.0
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 3.0e-77 292.4 248 60.9
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 3.9e-77 292.0 250 60.4
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 3.9e-77 292.0 247 61.9
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 3.9e-77 292.0 247 61.9
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 3.9e-77 292.0 247 59.9
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 6.7e-77 291.2 248 62.1
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 1.1e-76 290.4 249 60.2
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.1e-76 290.4 250 62.0
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 2.0e-76 289.7 249 60.2
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 3.3e-76 288.9 249 60.2
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 4.3e-76 288.5 247 59.1
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 7.4e-76 287.7 251 61.8
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 7.4e-76 287.7 247 61.1
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 9.7e-76 287.3 248 58.9
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 9.7e-76 287.3 249 59.8
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 1.3e-75 287.0 250 60.4
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.8e-75 285.8 249 59.8
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 4.8e-75 285.0 249 59.8
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 4.8e-75 285.0 248 58.1
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 6.3e-75 284.6 249 59.0
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 1.1e-74 283.9 249 57.8
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.8e-74 283.1 249 58.6
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.8e-74 283.1 249 58.6
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.8e-74 283.1 249 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 2.4e-74 282.7 249 59.0
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 4.1e-74 282.0 248 60.5
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 5.3e-74 281.6 249 58.6
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 6.9e-74 281.2 249 58.2
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 9.1e-74 280.8 235 64.7
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.2e-73 280.4 249 58.2
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 1.2e-73 280.4 251 57.4
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 4.5e-73 278.5 249 57.8
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 5.9e-73 278.1 250 58.8
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 5.9e-73 278.1 243 60.5
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 7.7e-73 277.7 250 58.4
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.4e-71 273.5 247 57.1
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.2e-70 270.4 250 56.4
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 3.6e-70 268.9 249 56.2
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 1.0e-69 267.3 250 56.0
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 1.1e-68 263.8 252 55.6
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 3.3e-68 262.3 247 53.8
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 4.4e-68 261.9 247 53.0
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 4.4e-68 261.9 173 75.1
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 4.8e-67 258.5 239 57.7
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 1.8e-66 256.5 249 52.2
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 9.1e-66 254.2 252 53.6
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.2e-65 253.8 252 53.2
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.6e-65 253.4 253 53.4
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.0e-65 253.1 253 53.0
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.0e-65 253.1 252 53.6
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.6e-65 252.7 253 53.0
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 1.2e-62 243.8 245 58.8
Hma1.2p1_0326F.1_g126210 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 2.7e-62 242.7 169 69.8
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 3.5e-57 225.7 169 64.5
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 6.5e-56 221.5 249 49.8
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 7.0e-50 201.4 248 44.4
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 8.5e-48 194.5 248 43.5
RcHm_v2.0_Chr1g0380661 Rosa chinensis HOM05D002263 ORTHO05D003537 4.2e-47 192.2 267 46.1
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 5.2e-45 185.3 248 44.0
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 5.2e-45 185.3 238 50.4
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 7.5e-44 181.4 255 44.3
Actinidia09172 Actinidia chinensis HOM05D002263 ORTHO05D003537 9.8e-44 181.0 169 58.0
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 4.9e-43 178.7 250 39.6
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.4e-42 176.4 254 39.4
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 5.4e-42 175.3 254 44.9
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 7.0e-42 174.9 252 42.1
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 2.7e-41 172.9 249 39.0
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 4.5e-41 172.2 252 42.5
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 4.5e-41 172.2 252 42.5
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 2.8e-38 162.9 138 58.7
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 3.6e-38 162.5 272 37.1
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 2.3e-37 159.8 173 55.5
SGA_v2.0_scaffold70G23531 Striga asiatica HOM05D002263 ORTHO05D029194 1.7e-35 153.7 124 59.7
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 2.7e-33 146.4 117 65.0
Lsat_1_v5_gn_5_88760 Lactuca sativa HOM05D002263 ORTHO05D027778 8.6e-32 141.4 137 51.8
SHI26139 Sapria himalayana HOM05D002263 ORTHO05D003537 2.3e-29 133.3 118 53.4
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 4.0e-29 132.5 168 45.2
Lsat_1_v5_gn_6_66560 Lactuca sativa HOM05D002263 ORTHO05D003537 9.8e-28 127.9 99 62.6
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.4e-26 124.0 170 45.9
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 7.8e-25 118.2 112 55.4
FvH4_3g01730 Fragaria vesca HOM05D002263 ORTHO05D003537 1.0e-24 117.9 172 44.8
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 1.9e-23 113.6 208 35.6
Rhsim07G0089300 Rhododendron simsii HOM05D002263 ORTHO05D029194 1.9e-23 113.6 66 78.8
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 9.2e-18 94.7 88 56.8
Medtr2g101930 Medicago truncatula HOM05D002263 ORTHO05D003537 2.7e-17 93.2 100 46.0
C03p05160 Brassica napus HOM05D002263 ORTHO05D003537 1.7e-16 90.5 113 43.4
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.3e-16 90.1 101 51.5
C03p05140 Brassica napus HOM05D002263 ORTHO05D003537 3.0e-16 89.7 113 43.4
Lj4A282G40 Lonicera japonica HOM05D002263 ORTHO05D003537 6.6e-16 88.6 167 34.7
BcaC05g29614 Brassica carinata HOM05D002263 ORTHO05D027778 7.3e-15 85.1 136 34.6
C05p59090 Brassica napus HOM05D002263 ORTHO05D027778 7.3e-15 85.1 136 34.6
Lj4A282T39 Lonicera japonica HOM05D002263 ORTHO05D003537 1.1e-13 81.3 91 52.7
DCAR_029449 Daucus carota HOM05D002263 ORTHO05D029194 1.4e-13 80.9 64 62.5
Rhsim09G0081000 Rhododendron simsii HOM05D002263 ORTHO05D003537 3.0e-08 63.2 38 81.6
SHI19943 Sapria himalayana HOM05D002263 ORTHO05D003537 5.6e-07 58.9 66 43.9
BolC5t34564H Brassica oleracea HOM05D002263 ORTHO05D027778 1.6e-06 57.4 76 43.4
TPR.G32072 Trifolium pratense HOM05D002263 ORTHO05D003537 6.2e-06 55.5 44 59.1


User provided reference genes

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