Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 7.5e-192 673.7 345 100.0
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.8e-178 628.6 345 93.0
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.1e-155 553.5 343 81.6
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 6.2e-154 547.7 344 81.4
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 2.6e-152 542.3 368 76.6
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.3e-135 486.9 345 71.6
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.2e-134 482.3 345 71.6
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 3.5e-133 478.8 342 71.1
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 1.3e-132 476.9 345 70.1
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 2.3e-132 476.1 345 69.6
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.5e-131 472.6 351 70.4
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 4.3e-131 471.9 345 69.6
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 8.2e-130 467.6 339 71.1
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.4e-129 466.1 342 69.0
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.3e-129 464.9 342 69.6
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.5e-127 457.6 342 69.0
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 4.2e-126 455.3 351 66.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 3.6e-125 452.2 343 68.5
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 3.0e-124 449.1 342 67.8
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.9e-124 448.7 351 66.1
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.1e-123 447.2 351 66.7
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.2e-122 443.0 352 65.6
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.8e-121 439.9 351 65.5
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 2.2e-119 433.0 348 65.5
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 6.5e-119 431.4 346 63.9
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.1e-118 430.6 345 64.1
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 1.9e-118 429.9 346 63.3
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 4.2e-118 428.7 351 63.8
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 5.5e-118 428.3 346 64.2
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 7.9e-117 424.5 343 63.3
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 7.9e-117 424.5 351 63.8
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 7.9e-117 424.5 351 63.2
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.0e-116 424.1 359 63.2
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.8e-116 423.3 374 60.2
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 2.0e-115 419.9 352 63.9
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 4.4e-115 418.7 343 63.6
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 5.7e-115 418.3 345 62.9
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.8e-114 416.0 349 64.2
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 6.3e-114 414.8 345 62.9
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.1e-113 414.1 351 62.7
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 4.1e-113 412.1 351 60.7
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 7.7e-112 407.9 412 55.1
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 1.7e-111 406.8 352 60.2
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.7e-111 406.8 341 63.0
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.2e-111 406.4 351 60.4
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.2e-111 406.4 341 63.3
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 2.9e-111 406.0 349 61.9
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.8e-111 405.6 351 60.7
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 3.2e-110 402.5 351 61.0
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 4.2e-110 402.1 349 60.7
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 5.5e-110 401.7 351 61.0
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 9.4e-110 401.0 353 60.6
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 4.7e-109 398.7 345 61.7
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.4e-108 397.1 351 59.3
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.3e-108 396.4 351 59.5
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.9e-108 395.6 351 59.5
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 6.7e-108 394.8 340 62.4
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.1e-107 394.0 349 61.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.1e-107 394.0 351 60.1
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.4e-107 392.1 359 60.4
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 7.4e-107 391.3 320 64.7
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 4.8e-106 388.7 351 60.4
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 8.2e-106 387.9 351 57.0
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.4e-105 387.1 345 60.0
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.4e-105 387.1 410 52.0
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.4e-105 387.1 346 60.7
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.1e-105 386.0 350 58.0
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.6e-104 382.9 351 59.0
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 7.7e-104 381.3 345 58.6
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.3e-103 380.6 341 58.7
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.7e-103 380.2 345 58.0
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 2.2e-103 379.8 277 68.6
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 5.0e-103 378.6 350 59.4
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 6.5e-103 378.3 351 61.0
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.1e-102 377.5 371 56.6
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 3.2e-102 375.9 351 57.8
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.1e-101 373.2 351 58.1
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 6.1e-101 371.7 354 58.5
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.8e-100 370.2 352 58.5
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.2e-99 367.5 346 58.1
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 4.4e-99 365.5 346 57.8
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 4.4e-99 365.5 383 54.0
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.7e-98 363.6 346 57.8
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.7e-98 363.6 353 57.2
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 4.8e-98 362.1 340 55.6
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 6.3e-98 361.7 346 57.5
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 6.3e-98 361.7 346 57.5
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 8.2e-98 361.3 351 57.0
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.8e-97 360.1 376 52.9
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 3.1e-97 359.4 351 56.7
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.1e-97 359.4 348 56.6
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 9.1e-97 357.8 331 58.6
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 2.0e-96 356.7 363 54.8
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 5.9e-96 355.1 352 56.2
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 8.5e-95 351.3 339 56.3
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 8.5e-95 351.3 348 52.9
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.1e-94 350.9 350 55.7
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.1e-93 346.7 345 53.6
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 3.0e-92 342.8 368 52.4
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.3e-90 337.4 354 53.4
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.2e-90 336.7 344 55.5
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 2.2e-90 336.7 346 53.8
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.4e-89 334.0 345 54.5
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 7.0e-81 305.1 279 59.1
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.2e-80 304.3 346 49.4
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-79 300.4 316 53.5
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 3.0e-76 289.7 286 54.9
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.5e-75 287.3 350 49.4
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.3e-74 284.3 217 65.4
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.9e-74 283.1 239 62.3
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 1.9e-70 270.4 197 69.0
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-69 267.7 293 52.9
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 4.7e-69 265.8 275 55.6
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 4.7e-69 265.8 346 45.4
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.2e-68 262.3 300 52.0
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.1e-65 254.6 231 60.2
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.7e-63 247.3 346 41.3
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 1.7e-63 247.3 352 40.6
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.9e-63 246.1 198 66.2
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.3e-62 241.9 187 64.2
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.8e-61 240.0 206 60.7
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 6.2e-61 238.8 346 44.8
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 8.9e-60 235.0 324 48.1
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 3.7e-58 229.6 165 68.5
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 2.7e-56 223.4 219 55.7
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 5.1e-55 219.2 285 49.5
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 3.3e-54 216.5 354 42.1
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 2.1e-48 197.2 224 52.7
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.5e-48 196.4 337 41.2
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 4.6e-48 196.1 348 35.9
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.1e-46 191.4 155 65.8
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.5e-46 191.0 252 47.2
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 3.3e-46 189.9 153 62.7
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 7.1e-41 172.2 218 49.1
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 1.1e-38 164.9 112 74.1
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.6e-37 161.0 183 52.5
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-36 158.3 108 74.1
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.8e-36 157.5 112 69.6
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.0e-35 154.1 235 46.0
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.6e-32 144.4 147 53.1
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.8e-29 133.7 106 67.9
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.2e-26 124.0 97 67.0
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 2.5e-22 110.5 71 74.6
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 5.6e-22 109.4 133 41.4
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 2.8e-21 107.1 192 39.6
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 1.2e-19 101.7 201 38.8
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.0e-18 98.6 90 52.2
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 2.1e-16 90.9 108 48.1
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.0e-15 88.6 148 39.9
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-15 85.9 90 48.9
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.9e-14 84.3 69 60.9
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.3e-14 83.6 52 76.9
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.2e-13 80.9 70 58.6
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.2e-13 80.9 65 58.5
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 6.9e-12 75.9 98 43.9
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.2e-10 70.9 105 44.8
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 3.9e-07 60.1 66 53.0
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 3.3e-06 57.0 50 58.0


User provided reference genes

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