Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.5e-150 537.0 469 100.0
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.1e-92 344.7 490 73.9
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.8e-87 327.4 360 68.3
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 3.1e-87 326.6 366 61.2
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 4.0e-87 326.2 371 65.8
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 6.8e-87 325.5 360 65.8
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 3.2e-84 316.6 361 67.9
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 3.5e-83 313.2 370 61.9
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.5e-81 307.8 374 59.6
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 7.3e-81 305.4 360 58.1
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 7.3e-81 305.4 373 60.3
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.6e-80 303.1 366 59.3
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 8.1e-80 302.0 362 66.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 1.1e-79 301.6 362 63.3
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 1.8e-79 300.8 363 59.8
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.5e-78 297.7 374 71.4
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.6e-78 297.0 359 60.7
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.4e-78 296.6 384 67.7
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 3.4e-78 296.6 375 71.5
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.2e-77 293.9 370 58.6
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 2.9e-77 293.5 371 67.9
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 3.7e-77 293.1 366 54.9
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 8.3e-77 292.0 384 60.7
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 8.3e-77 292.0 367 62.4
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.1e-76 291.6 361 56.8
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 5.4e-76 289.3 368 62.8
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 5.4e-76 289.3 364 60.7
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.2e-75 288.1 380 69.7
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 3.5e-75 286.6 368 60.9
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 3.5e-75 286.6 365 57.8
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 6.0e-75 285.8 361 50.4
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 6.0e-75 285.8 381 62.2
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.0e-75 285.8 366 56.0
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.3e-74 284.6 374 75.4
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 8.6e-74 282.0 380 59.2
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.1e-73 281.6 368 58.7
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 3.3e-73 280.0 376 59.0
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 5.6e-73 279.3 364 56.3
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 5.6e-73 279.3 364 48.1
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.6e-73 279.3 383 58.0
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 7.3e-73 278.9 360 63.9
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 9.6e-73 278.5 368 58.4
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 4.7e-72 276.2 315 61.6
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 3.1e-71 273.5 362 52.5
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 3.1e-71 273.5 383 52.7
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 4.0e-71 273.1 257 74.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 8.9e-71 271.9 364 50.8
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 8.9e-71 271.9 373 57.4
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.2e-70 271.6 385 61.3
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 1.2e-70 271.6 362 63.3
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 3.4e-70 270.0 363 63.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.4e-70 269.6 372 70.2
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 4.4e-70 269.6 374 59.6
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 7.6e-70 268.9 372 68.0
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.3e-69 268.1 368 71.2
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.2e-69 267.3 353 52.1
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 2.2e-69 267.3 359 65.7
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 8.4e-69 265.4 365 66.3
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.4e-68 264.6 363 52.6
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.4e-68 264.6 373 69.4
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.9e-68 264.2 358 61.7
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 3.2e-68 263.5 390 56.7
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 5.4e-68 262.7 388 60.8
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 7.1e-68 262.3 365 52.3
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 9.3e-68 261.9 359 62.1
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.2e-67 261.5 365 54.2
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.2e-67 261.5 360 46.1
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 2.1e-67 260.8 374 51.9
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.7e-67 260.4 377 46.7
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 6.0e-67 259.2 368 51.9
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.0e-66 258.5 388 56.2
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.3e-66 258.1 270 57.4
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 1.7e-66 257.7 359 48.5
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 2.3e-66 257.3 361 56.0
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.1e-65 255.0 366 63.7
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 2.5e-65 253.8 365 55.9
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 2.5e-65 253.8 360 60.6
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.5e-65 253.8 413 59.8
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 4.3e-65 253.1 355 53.2
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 5.6e-65 252.7 408 58.1
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 9.6e-65 251.9 373 49.9
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.6e-64 251.1 364 65.4
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.6e-64 251.1 364 65.4
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 1.6e-64 251.1 373 64.6
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 2.8e-64 250.4 357 55.2
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 3.6e-64 250.0 363 51.0
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 4.8e-64 249.6 327 62.4
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 6.2e-64 249.2 385 59.0
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.2e-64 249.2 379 57.5
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-63 248.4 366 50.5
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.1e-63 248.4 360 58.3
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.4e-63 248.1 379 54.6
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 5.3e-63 246.1 366 68.3
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 5.3e-63 246.1 271 64.2
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.5e-62 244.6 364 55.8
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 2.6e-62 243.8 372 48.7
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.4e-62 243.0 365 55.1
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 4.4e-62 243.0 425 47.1
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 1.7e-61 241.1 369 60.7
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 4.9e-61 239.6 365 48.2
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 8.4e-61 238.8 373 60.3
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 1.4e-60 238.0 358 51.7
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.4e-60 238.0 335 62.4
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.4e-60 238.0 144 81.9
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.2e-60 236.9 365 61.4
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 4.2e-60 236.5 391 49.6
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 1.2e-59 235.0 381 60.4
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.6e-59 234.6 371 58.2
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 2.7e-59 233.8 368 50.8
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.7e-59 233.8 382 50.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 5.1e-58 229.6 324 54.0
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 4.3e-57 226.5 412 43.0
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 1.6e-56 224.6 370 45.4
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.1e-55 221.9 335 60.9
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.1e-55 221.9 357 42.9
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 6.9e-55 219.2 409 56.5
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.5e-54 218.0 360 54.2
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.5e-54 218.0 322 52.8
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 2.0e-54 217.6 349 51.3
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.7e-53 214.5 271 49.8
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.4e-52 209.5 273 55.3
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 6.0e-51 206.1 372 46.2
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-50 205.3 364 53.3
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.3e-50 204.9 268 54.1
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 1.3e-50 204.9 349 50.4
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.1e-49 201.8 365 52.9
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 9.6e-49 198.7 378 52.4
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 9.6e-49 198.7 378 52.4
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 8.1e-48 195.7 353 50.4
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.6e-46 189.1 353 39.9
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.9e-45 187.2 221 56.6
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 5.5e-44 183.0 178 60.1
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 2.3e-42 177.6 145 65.5
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.8e-40 170.6 142 63.4
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 5.0e-37 159.8 363 39.9
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 3.2e-36 157.1 142 59.2
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 6.1e-35 152.9 358 36.6
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 3.0e-34 150.6 301 41.2
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.7e-33 146.4 102 69.6
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 6.9e-31 139.4 250 50.8
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.9e-28 131.3 320 39.1
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 3.6e-27 127.1 257 40.9
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 6.3e-24 116.3 81 67.9
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 8.2e-24 115.9 252 49.2
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 4.5e-22 110.2 98 57.1
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 2.5e-20 104.4 75 69.3
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 5.5e-20 103.2 287 32.8
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 1.0e-18 99.0 50 86.0
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 2.0e-17 94.7 113 38.9
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 8.0e-11 72.8 138 40.6
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-10 71.6 237 43.0
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 5.7e-09 66.6 135 54.1
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 1.3e-08 65.5 92 40.2
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 3.7e-08 63.9 95 40.0
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.1e-07 62.4 92 39.1
CSS0025735 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.4e-07 61.2 40 87.5
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 3.1e-07 60.8 119 33.6
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 3.1e-07 60.8 98 37.8
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 5.3e-07 60.1 95 36.8
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 7.0e-07 59.7 31 71.0
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 9.1e-07 59.3 34 67.6
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 9.1e-07 59.3 34 67.6
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 9.1e-07 59.3 34 67.6
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 1.2e-06 58.9 34 67.6
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.6e-06 58.5 34 61.8
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 1.6e-06 58.5 92 35.9
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 1.6e-06 58.5 96 39.6
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 2.7e-06 57.8 34 64.7
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 3.5e-06 57.4 34 64.7
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 4.5e-06 57.0 33 69.7
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 5.9e-06 56.6 31 71.0
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 5.9e-06 56.6 36 66.7
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 5.9e-06 56.6 34 64.7
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 5.9e-06 56.6 34 64.7
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 5.9e-06 56.6 34 64.7
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 7.7e-06 56.2 29 72.4
CAN.G624.19 Capsicum annuum HOM05D005264 ORTHO05D005428 7.7e-06 56.2 34 64.7
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 7.7e-06 56.2 34 64.7
HPP92_013043 Vanilla planifolia HOM05D005264 ORTHO05D005428 7.7e-06 56.2 34 64.7


User provided reference genes

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