Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.4e-71 271.6 138 100.0
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 4.7e-44 181.4 144 70.8
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 4.7e-44 181.4 144 70.8
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 6.1e-44 181.0 144 70.8
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.4e-43 179.9 144 70.1
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.8e-43 179.5 144 70.1
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 2.3e-43 179.1 143 71.3
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.0e-43 178.7 144 70.1
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 4.0e-43 178.3 144 70.1
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.2e-43 177.9 144 70.1
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 5.2e-43 177.9 144 70.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.8e-43 177.2 144 70.8
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 8.8e-43 177.2 144 70.8
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 8.8e-43 177.2 144 69.4
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 8.8e-43 177.2 144 69.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.2e-42 176.8 144 69.4
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.5e-42 176.4 144 68.8
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.5e-42 176.4 144 70.1
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.0e-42 176.0 144 68.8
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 4.4e-42 174.9 144 68.8
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 7.5e-42 174.1 144 67.4
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 7.5e-42 174.1 144 68.1
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 9.8e-42 173.7 144 67.4
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.3e-41 173.3 140 69.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.7e-41 172.9 144 68.8
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.7e-41 172.9 144 68.1
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.7e-41 172.9 144 68.1
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.8e-41 172.2 144 67.4
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 4.8e-41 171.4 136 71.3
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 4.8e-41 171.4 144 67.4
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 8.3e-41 170.6 144 66.7
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 8.3e-41 170.6 144 66.7
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 8.3e-41 170.6 140 67.9
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 8.3e-41 170.6 143 66.4
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 8.3e-41 170.6 144 66.0
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 8.3e-41 170.6 144 66.7
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.8e-40 169.5 144 66.7
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 2.4e-40 169.1 144 66.7
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.4e-40 169.1 141 67.4
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 4.1e-40 168.3 138 68.8
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 5.4e-40 167.9 144 65.3
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 7.0e-40 167.5 137 68.6
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.0e-40 167.5 137 68.6
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.0e-40 167.5 137 68.6
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 7.0e-40 167.5 137 68.6
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 7.0e-40 167.5 142 66.9
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 9.1e-40 167.2 138 68.1
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 1.6e-39 166.4 137 67.2
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.6e-39 166.4 137 67.9
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.6e-39 166.4 138 68.1
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.6e-39 166.4 138 68.1
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.6e-39 166.4 144 66.0
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.6e-39 166.4 144 66.0
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.0e-39 166.0 135 68.1
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 2.0e-39 166.0 144 65.3
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 2.0e-39 166.0 142 66.9
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.7e-39 165.6 144 64.6
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.5e-39 165.2 131 69.5
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 5.9e-39 164.5 138 66.7
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.7e-39 164.1 137 67.9
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.0e-38 163.7 138 67.4
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.0e-38 163.7 137 67.9
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.0e-38 163.7 138 67.4
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.3e-38 163.3 137 67.9
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.7e-38 162.9 137 67.2
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-38 162.9 140 65.0
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-38 162.9 140 65.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 2.2e-38 162.5 137 67.2
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 2.2e-38 162.5 137 67.2
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 2.9e-38 162.2 137 66.4
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 5.0e-38 161.4 144 62.5
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 5.0e-38 161.4 145 64.1
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 6.5e-38 161.0 139 64.7
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 6.5e-38 161.0 146 65.1
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 8.5e-38 160.6 138 65.9
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 8.5e-38 160.6 146 65.1
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.1e-37 160.2 144 61.8
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.1e-37 160.2 145 64.1
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.1e-37 160.2 137 66.4
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.5e-37 159.8 144 62.5
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.5e-37 159.8 135 65.9
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.9e-37 159.5 144 63.9
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.9e-37 159.5 144 63.9
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.9e-37 159.5 144 63.9
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.9e-37 159.5 152 61.2
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 2.5e-37 159.1 139 66.2
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 3.2e-37 158.7 139 65.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.2e-37 158.3 139 65.5
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 4.2e-37 158.3 144 63.2
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 4.2e-37 158.3 144 62.5
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 4.2e-37 158.3 144 63.2
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 5.5e-37 157.9 139 64.7
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 5.5e-37 157.9 142 64.8
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.7e-36 155.6 136 63.2
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 3.6e-36 155.2 145 62.8
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 6.1e-36 154.5 176 55.1
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.8e-35 152.9 176 54.5
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.3e-35 152.5 142 60.6
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 5.2e-35 151.4 144 61.1
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.6e-34 149.1 142 59.2
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.6e-34 149.1 145 61.4
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 9.8e-34 147.1 142 57.7
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.8e-32 142.9 145 58.6
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.1e-32 142.1 137 58.4
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 4.1e-32 141.7 131 61.1
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 1.2e-31 140.2 133 60.2
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 4.5e-31 138.3 145 60.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.3e-30 136.7 137 58.4
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 3.8e-30 135.2 75 86.7
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 6.6e-30 134.4 208 43.8
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 6.6e-30 134.4 136 52.2
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 8.6e-30 134.0 190 47.4
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.1e-29 133.7 138 52.2
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 2.5e-29 132.5 129 55.8
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 3.3e-29 132.1 85 77.6
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.8e-28 129.0 89 74.2
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.8e-28 129.0 142 57.7
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 3.6e-28 128.6 70 87.1
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.3e-27 125.9 138 48.6
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.8e-27 124.4 107 65.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.8e-27 124.4 75 80.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.5e-26 123.2 68 85.3
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 4.9e-25 118.2 136 54.4
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-23 113.6 94 67.0
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 2.9e-22 109.0 122 52.5
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.7e-17 93.2 105 55.2
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.4e-16 89.4 101 57.4
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-15 86.3 98 55.1
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 3.5e-15 85.5 46 82.6
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 3.5e-15 85.5 93 59.1
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 1.3e-14 83.6 45 82.2
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-14 83.2 95 55.8
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-14 83.2 95 55.8
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-14 83.2 95 55.8
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.0e-14 81.6 93 54.8
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 8.6e-14 80.9 92 56.5
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 9.5e-13 77.4 105 52.4
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.8e-12 75.9 96 53.1
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.8e-12 75.9 93 52.7
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 8.1e-12 74.3 93 52.7
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.6e-10 69.3 97 45.4
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.9e-08 63.2 42 76.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.0e-06 57.4 47 61.7
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.7e-06 56.6 97 43.3
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 3.0e-06 55.8 37 73.0


User provided reference genes

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