Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 8.9e-162 573.5 289 100.0
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 3.6e-147 525.0 305 88.5
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.3e-146 522.3 289 92.4
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 6.8e-146 520.8 289 91.3
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-145 520.0 289 92.0
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.5e-145 519.6 298 89.9
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.0e-145 519.2 274 94.5
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.6e-145 518.8 274 94.5
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 2.6e-145 518.8 298 89.9
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 9.8e-145 516.9 289 88.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.7e-144 515.0 273 93.4
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 3.7e-144 515.0 289 90.0
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 3.7e-144 515.0 289 90.0
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 6.4e-144 514.2 301 89.0
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 6.4e-144 514.2 289 90.7
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.4e-143 513.1 296 88.2
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.4e-143 513.1 289 90.3
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 3.2e-143 511.9 289 90.0
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.4e-143 511.1 296 89.2
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 5.4e-143 511.1 307 87.3
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 9.2e-143 510.4 291 90.7
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 2.1e-142 509.2 302 87.1
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.7e-142 508.8 296 88.5
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.6e-142 508.1 303 86.8
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 4.6e-142 508.1 289 88.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 7.8e-142 507.3 291 89.7
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 3.9e-141 505.0 304 84.2
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.9e-141 505.0 289 87.5
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 6.6e-141 504.2 273 93.4
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.6e-141 504.2 289 87.9
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 8.6e-141 503.8 304 83.9
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 2.5e-140 502.3 273 91.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.5e-140 502.3 273 92.3
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 9.5e-140 500.4 296 87.2
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.2e-139 500.0 289 87.2
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.6e-139 499.6 289 87.2
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.8e-139 498.8 299 86.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.8e-139 498.8 289 87.9
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 6.8e-138 494.2 317 83.0
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.2e-137 493.4 290 86.9
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.2e-137 493.4 293 86.3
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.6e-137 492.3 322 81.7
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 7.5e-137 490.7 293 86.0
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 7.5e-137 490.7 289 85.1
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 9.9e-137 490.3 298 84.9
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.3e-136 490.0 298 84.6
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 2.2e-136 489.2 297 85.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.2e-136 489.2 289 87.2
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-135 486.9 273 89.0
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-135 486.9 273 89.0
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 3.2e-135 485.3 327 80.1
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 9.2e-135 483.8 267 89.9
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 2.7e-134 482.3 293 82.6
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.0e-133 480.3 307 81.1
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-133 479.9 287 82.9
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.3e-133 479.9 332 75.6
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.7e-133 479.6 290 83.4
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.3e-133 479.2 296 85.8
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 3.0e-133 478.8 275 86.5
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 3.9e-133 478.4 289 85.5
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.1e-132 476.9 289 83.0
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.1e-132 476.9 288 82.3
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.1e-132 476.9 289 83.0
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.1e-132 476.9 287 82.6
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.9e-132 476.1 299 82.9
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 5.6e-132 474.6 289 82.4
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 7.3e-132 474.2 292 81.2
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.6e-131 473.0 289 82.0
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.1e-131 472.6 293 81.2
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 4.7e-131 471.5 273 83.5
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 8.1e-131 470.7 289 82.0
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.4e-130 469.9 290 81.0
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 5.2e-130 468.0 274 83.9
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 7.6e-129 464.2 289 84.1
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.3e-128 463.4 273 83.5
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.2e-128 462.6 308 78.2
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 3.8e-128 461.8 291 80.1
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 3.8e-128 461.8 291 80.1
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 3.8e-128 461.8 292 79.5
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 3.8e-128 461.8 293 81.2
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 3.8e-128 461.8 293 81.2
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.9e-127 459.5 320 75.0
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.9e-127 459.5 292 79.8
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.2e-126 456.8 273 83.2
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.5e-126 455.3 277 80.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 4.6e-126 454.9 291 80.1
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.3e-125 453.4 302 78.5
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.3e-125 452.6 290 78.3
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.3e-125 452.6 291 77.7
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 6.6e-125 451.1 334 73.7
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.1e-124 450.3 298 78.5
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 2.5e-124 449.1 294 79.3
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 2.5e-124 449.1 294 79.3
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.5e-124 449.1 298 79.2
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.5e-124 449.1 310 74.8
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 4.3e-124 448.4 260 86.9
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 4.3e-124 448.4 312 75.3
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 6.2e-123 444.5 326 73.3
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.4e-122 443.4 290 78.6
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 9.9e-121 437.2 293 74.4
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 4.9e-120 434.9 279 76.3
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 8.4e-120 434.1 309 71.8
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 4.2e-119 431.8 296 78.0
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 9.3e-119 430.6 276 77.2
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-118 430.3 280 75.0
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.0e-117 427.2 289 73.7
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 4.8e-115 418.3 233 90.1
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 3.4e-113 412.1 222 92.3
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 2.4e-111 406.0 257 80.5
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.8e-107 391.7 264 73.1
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 9.3e-103 377.5 291 70.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.1e-102 376.3 291 68.7
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 6.0e-102 374.8 276 72.1
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.7e-101 371.3 293 68.3
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 9.6e-100 367.5 205 89.3
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 2.2e-96 356.3 255 71.0
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.2e-95 352.1 255 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 6.7e-93 344.7 283 62.9
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.8e-91 339.3 228 76.8
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.8e-91 339.3 284 61.6
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.3e-90 335.1 282 61.3
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.0e-89 333.2 192 87.5
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 6.5e-88 328.2 267 65.2
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.5e-88 327.8 246 68.7
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 2.7e-86 322.8 295 58.6
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.8e-83 312.8 181 87.8
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 3.1e-82 309.3 190 82.6
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.0e-80 304.3 214 69.2
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.5e-76 290.4 268 57.5
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.1e-74 284.3 181 78.5
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.2e-71 272.3 246 64.6
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.2e-67 260.0 147 91.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.2e-65 254.2 190 68.9
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.7e-51 206.1 112 91.1
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.9e-49 198.7 112 87.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.3e-48 196.8 120 80.0
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.9e-47 193.7 116 86.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 7.5e-44 181.8 111 81.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-42 177.6 120 76.7
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.7e-41 173.3 263 40.3
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 2.3e-40 170.2 139 68.3
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.1e-38 163.7 95 87.4
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 1.5e-36 157.5 97 81.4
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 2.2e-35 153.7 94 80.9
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.6e-33 147.5 268 33.2
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 7.8e-33 145.2 104 72.1
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.3e-32 144.4 235 44.3
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 8.0e-30 135.2 258 34.1
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.5e-28 131.0 118 61.9
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.5e-28 131.0 118 61.9
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 2.6e-28 130.2 105 68.6
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 2.6e-28 130.2 173 45.1
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.6e-28 130.2 105 68.6
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 3.4e-28 129.8 247 32.8
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 2.2e-27 127.1 105 65.7
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 2.9e-27 126.7 105 66.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 2.9e-27 126.7 66 92.4
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.2e-26 123.2 105 65.7
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 7.1e-26 122.1 118 59.3
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.6e-22 109.8 155 41.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 4.7e-22 109.4 87 65.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 2.3e-21 107.1 155 41.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 9.9e-20 101.7 83 65.1
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.1e-18 95.5 61 82.0
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 4.3e-15 86.3 59 76.3
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.1e-14 84.0 46 80.4


User provided reference genes

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