Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 5.5e-192 674.1 329 100.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 8.9e-134 480.7 324 71.3
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.1e-131 473.8 325 72.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 7.0e-131 471.1 296 74.3
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.7e-130 469.2 326 69.0
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.7e-129 466.5 328 67.7
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.7e-129 466.5 296 73.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.5e-128 463.4 328 67.1
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.5e-128 462.6 305 71.1
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.2e-127 460.3 305 70.8
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.6e-127 459.9 305 70.5
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 2.1e-127 459.5 324 67.3
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.1e-127 459.5 324 68.8
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 3.6e-127 458.8 310 69.4
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 8.1e-127 457.6 294 71.8
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 5.2e-126 454.9 328 66.8
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.2e-125 453.8 294 71.1
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.2e-125 453.8 291 72.9
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 3.4e-125 452.2 335 65.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.4e-125 451.8 337 64.7
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 7.5e-125 451.1 326 66.6
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.9e-124 449.1 298 70.1
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.9e-124 448.4 320 68.1
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 7.1e-123 444.5 328 64.0
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 2.7e-122 442.6 292 70.5
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.5e-122 442.2 340 63.8
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.3e-121 440.3 356 62.6
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.7e-121 439.9 292 70.2
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.8e-119 432.6 286 70.6
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.8e-119 432.6 286 69.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.6e-119 432.2 296 67.9
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.6e-119 432.2 306 67.6
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.4e-118 430.3 307 66.1
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 4.0e-118 428.7 285 71.6
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 8.9e-118 427.6 284 69.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.0e-117 426.4 287 69.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 2.6e-117 426.0 321 62.9
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 7.6e-117 424.5 285 68.8
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.3e-116 423.7 292 65.4
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.2e-116 422.9 314 62.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.2e-116 422.9 314 62.7
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.9e-116 422.5 290 67.2
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.1e-115 420.6 246 77.6
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.4e-115 419.5 292 67.5
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 4.1e-115 418.7 289 66.8
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 4.1e-115 418.7 346 57.8
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.1e-115 417.9 296 64.9
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 7.1e-115 417.9 312 64.4
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 9.2e-115 417.5 284 67.3
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.6e-114 416.8 290 65.9
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.7e-114 416.0 284 67.3
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 4.6e-114 415.2 292 66.8
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 6.6e-113 411.4 326 58.0
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 6.6e-113 411.4 337 60.8
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.7e-113 411.0 254 73.6
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.1e-112 410.6 334 60.8
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-112 410.2 282 66.7
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.6e-111 406.8 252 73.4
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.6e-111 405.6 292 61.0
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 6.2e-111 404.8 250 74.0
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 6.9e-110 401.4 254 71.3
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.6e-109 399.4 292 61.0
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.4e-109 399.1 248 73.4
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 4.4e-109 398.7 285 63.2
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 5.8e-109 398.3 303 57.8
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.7e-108 396.7 292 59.6
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.9e-108 395.2 292 59.2
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 6.4e-108 394.8 305 57.7
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-107 394.0 290 59.3
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.1e-107 394.0 290 60.3
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 7.1e-107 391.3 305 57.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 2.1e-106 389.8 292 57.5
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.7e-106 389.4 325 53.8
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.7e-105 386.7 292 57.2
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 2.3e-105 386.3 250 70.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.9e-105 385.6 251 68.9
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 6.6e-105 384.8 292 57.2
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.9e-104 383.3 294 56.8
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 3.6e-103 379.0 288 59.0
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.1e-102 377.5 302 61.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.5e-101 373.6 228 72.8
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.3e-100 370.5 262 64.1
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.9e-100 368.6 282 60.6
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 8.7e-97 357.8 324 55.9
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.9e-96 356.7 270 58.1
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.9e-96 356.7 294 59.2
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 5.6e-96 355.1 284 59.5
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.1e-95 353.2 281 56.2
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 3.1e-94 349.4 326 54.6
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.4e-91 340.5 255 65.1
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.9e-91 340.1 294 52.0
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 9.3e-91 337.8 325 53.2
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.2e-90 337.4 235 68.1
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.3e-89 334.0 282 57.4
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.9e-86 321.6 188 75.0
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.2e-85 320.9 284 57.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 9.3e-83 311.2 559 35.1
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.5e-80 303.1 188 69.7
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.3e-79 300.8 195 67.2
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.1e-78 295.8 306 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 4.5e-77 292.4 279 47.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 5.5e-75 285.4 278 46.8
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.2e-74 284.3 154 81.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.7e-74 283.1 162 77.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 7.9e-74 281.6 312 44.9
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 7.4e-72 275.0 278 47.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.3e-64 249.6 153 70.6
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.7e-64 248.8 245 51.8
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-59 234.2 180 60.6
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 8.0e-58 228.4 241 52.3
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.3e-57 226.9 240 51.2
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 3.9e-57 226.1 148 67.6
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.5e-53 212.6 157 66.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.4e-46 191.0 146 70.5
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 7.7e-45 185.3 114 71.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.3e-44 184.5 229 45.9
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.5e-44 182.2 200 48.0
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.5e-43 180.3 134 64.9
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.1e-42 177.2 127 59.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-40 171.0 148 56.1
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 2.6e-40 170.2 289 36.0
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.3e-39 167.9 216 34.3
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 7.0e-38 162.2 127 60.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 2.8e-34 150.2 219 45.2
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 4.4e-32 142.9 132 55.3
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.2e-31 140.6 100 66.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.1e-30 136.7 100 64.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 9.2e-30 135.2 79 70.9
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.3e-20 104.0 76 56.6
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.8e-17 92.4 65 70.8
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 8.9e-17 92.0 79 63.3
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.4e-16 89.7 114 50.9
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.7e-15 87.8 81 51.9
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 1.5e-08 64.7 40 80.0


User provided reference genes

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