Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 0.0e+00 1505.3 774 100.0
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 0.0e+00 1176.4 779 79.7
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 0.0e+00 1139.4 770 78.1
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 2.2e-276 955.7 782 66.2
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 6.7e-273 944.1 782 64.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 2.8e-271 938.7 782 65.6
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.3e-263 913.3 774 62.8
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.2e-263 912.5 775 62.8
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 8.2e-263 910.6 775 63.6
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 4.5e-261 904.8 786 63.6
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.2e-259 898.3 784 61.5
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.7e-258 895.6 776 64.7
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 8.8e-257 890.6 781 63.4
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 8.8e-257 890.6 782 62.0
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 8.8e-257 890.6 782 62.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.7e-255 886.3 786 62.7
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.8e-254 882.9 780 62.9
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 3.1e-254 882.1 774 62.4
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.4e-251 873.2 817 61.2
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.5e-251 872.5 781 62.5
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 3.2e-251 872.1 780 62.3
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 4.2e-251 871.7 794 59.8
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 5.5e-251 871.3 785 61.3
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 7.2e-251 870.9 785 61.7
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 9.4e-251 870.5 774 60.9
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.0e-249 867.1 804 60.6
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.8e-246 856.3 782 61.5
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.6e-245 852.4 785 60.5
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.9e-243 846.3 778 61.6
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.7e-239 833.2 835 56.4
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 2.2e-239 832.8 835 56.6
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 3.7e-239 832.0 782 60.0
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.8e-239 831.6 835 56.3
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 9.1e-238 827.4 789 60.3
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 2.7e-237 825.9 783 59.8
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-236 823.5 835 55.9
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 4.2e-235 818.5 729 61.9
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 3.6e-234 815.5 793 58.9
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-233 813.9 858 54.8
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.8e-233 813.1 793 58.8
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.8e-233 813.1 775 59.4
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.2e-233 811.6 771 59.0
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 4.1e-230 802.0 787 58.4
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 5.5e-227 791.6 780 56.7
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-224 783.9 784 56.0
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.0e-221 773.1 774 57.0
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.0e-221 773.1 817 54.1
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.9e-220 769.2 776 55.3
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.9e-220 769.2 776 56.8
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 5.0e-220 768.5 771 56.8
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.2e-214 749.2 683 61.9
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 3.5e-213 745.7 845 52.4
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 3.3e-211 739.2 771 55.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 7.0e-206 721.5 910 49.8
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.1e-203 714.1 811 51.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.3e-203 712.6 776 53.0
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.2e-202 710.7 773 53.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 6.8e-201 704.9 724 56.9
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 9.2e-198 694.5 683 59.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 4.7e-194 682.2 791 50.4
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.8e-193 680.2 784 51.5
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.3e-193 679.9 765 54.0
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 9.9e-192 674.5 772 51.3
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 8.4e-191 671.4 817 49.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.1e-190 671.0 780 50.9
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 2.4e-190 669.8 780 50.9
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 8.6e-188 661.4 814 49.4
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 3.6e-186 656.0 770 51.4
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.4e-185 654.1 780 50.4
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.4e-185 653.3 799 51.4
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 3.4e-184 649.4 800 50.2
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.9e-180 636.0 787 47.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 4.8e-178 629.0 827 46.8
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.1e-177 626.3 600 58.3
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 8.4e-175 618.2 782 46.8
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.6e-173 614.0 593 59.9
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 8.7e-172 608.2 774 48.1
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 9.0e-169 598.2 784 46.9
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 6.4e-167 592.0 786 46.4
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 6.4e-167 592.0 766 48.3
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.0e-165 585.5 796 45.4
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 9.6e-163 578.2 375 80.5
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.3e-162 577.8 625 54.7
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 2.2e-159 567.0 876 42.6
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.2e-159 567.0 795 42.9
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 3.9e-156 556.2 536 57.8
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.3e-154 551.2 834 42.3
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.8e-153 547.4 783 45.3
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.7e-151 540.8 786 46.1
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.2e-151 540.4 771 45.1
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 2.5e-147 526.9 771 44.2
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 4.3e-147 526.2 780 42.7
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 5.7e-147 525.8 853 41.4
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 4.8e-146 522.7 779 44.9
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-145 521.5 798 42.7
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 3.1e-145 520.0 850 41.3
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.3e-143 514.6 779 42.7
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 5.0e-143 512.7 780 42.9
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.5e-143 512.3 786 43.8
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.1e-142 511.5 779 42.6
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 2.5e-142 510.4 779 42.6
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 3.2e-142 510.0 780 42.9
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 4.2e-142 509.6 786 43.4
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.0e-140 505.0 787 43.5
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 3.3e-139 500.0 798 41.7
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 4.2e-134 483.0 407 63.6
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.6e-133 481.1 835 40.5
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 2.3e-132 477.2 440 59.8
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.0e-131 474.2 774 41.9
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.7e-130 471.1 364 68.7
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 6.5e-127 459.1 475 56.2
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 4.0e-124 449.9 437 57.0
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 6.7e-124 449.1 773 38.3
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.2e-122 442.2 576 47.2
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.7e-114 417.9 635 43.8
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.2e-109 401.7 775 36.8
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 7.8e-104 382.5 344 61.9
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.6e-101 374.8 617 40.8
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.2e-99 368.6 627 41.0
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 5.6e-94 349.7 596 40.1
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 7.3e-94 349.4 617 39.2
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.2e-91 342.0 855 33.3
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 7.5e-91 339.3 610 40.3
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 9.8e-91 339.0 617 38.6
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.4e-89 334.3 389 49.6
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 6.0e-88 329.7 609 38.9
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 3.0e-87 327.4 368 50.8
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.0e-87 327.4 269 65.1
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.6e-87 326.2 286 59.1
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.1e-86 325.5 366 50.5
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.9e-86 324.7 253 66.8
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.5e-86 324.3 836 32.1
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.5e-83 312.8 836 31.7
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 2.4e-81 307.8 414 46.4
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 7.1e-81 306.2 360 50.0
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 6.0e-80 303.1 382 46.6
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.5e-78 297.7 680 33.2
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.2e-75 288.9 847 30.8
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 6.0e-72 276.6 576 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.6e-70 270.0 885 28.8
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 5.8e-67 260.0 201 69.7
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.2e-64 252.3 343 44.6
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.3e-62 244.2 281 56.6
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.1e-47 193.7 218 54.1
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 8.7e-47 193.0 302 42.4
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 4.3e-46 190.7 221 51.6
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.1e-44 186.0 176 54.0
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 3.8e-42 177.6 152 65.1
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.2e-41 174.1 147 57.1
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 5.1e-39 167.2 316 38.6
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.7e-39 166.8 148 64.9
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 5.0e-34 150.6 172 50.0
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 9.3e-33 146.4 101 79.2
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 6.1e-32 143.7 168 55.4
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.7e-29 135.6 285 35.1
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.4e-28 131.7 148 46.6
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 7.9e-24 116.7 93 64.5
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.3e-21 109.4 83 68.7
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.4e-19 101.3 117 49.6
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.0e-18 99.8 84 51.2
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.5e-17 95.1 155 43.2
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.2e-17 94.7 160 38.8
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 6.7e-15 87.0 144 41.0
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 6.3e-13 80.5 98 44.9
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.8e-12 79.0 53 64.2
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 1.8e-12 79.0 97 44.3
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 2.4e-12 78.6 181 33.1
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 9.1e-12 76.6 97 41.2
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 2.0e-11 75.5 145 36.6
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.9e-10 71.6 70 55.7
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 6.5e-10 70.5 51 70.6
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 4.2e-09 67.8 72 48.6
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.2e-09 67.8 74 54.1
MELO3C027569.2 Cucumis melo HOM05D011664 ORTHO05D015088 8.0e-08 63.5 59 55.9
MELO3C027354.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.8e-07 62.4 74 47.3
MELO3C027896.2 Cucumis melo HOM05D011664 ORTHO05D015088 3.0e-07 61.6 72 50.0
MELO3C000788.2 Cucumis melo HOM05D011664 ORTHO05D015088 5.2e-07 60.8 75 48.0
MELO3C027879.2 Cucumis melo HOM05D011664 ORTHO05D015088 6.7e-07 60.5 72 48.6
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.5e-06 59.3 71 50.7
MELO3C028025.2 Cucumis melo HOM05D011664 ORTHO05D015088 2.0e-06 58.9 72 48.6
MELO3C028026.2 Cucumis melo HOM05D011664 ORTHO05D015088 2.0e-06 58.9 72 48.6
MELO3C028239.2 Cucumis melo HOM05D011664 ORTHO05D015088 4.4e-06 57.8 68 48.5
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 7.5e-06 57.0 94 35.1
HanXRQChr16g0513531 Helianthus annuus HOM05D003625 ORTHO05D222387 9.7e-06 56.6 137 29.2


User provided reference genes

Program Settings