Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.3e-172 608.2 298 100.0
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 2.3e-152 542.3 299 88.6
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 2.5e-151 538.9 309 86.1
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 7.2e-151 537.3 298 86.6
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.4e-149 533.1 298 85.9
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.8e-149 532.7 298 85.9
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 4.4e-148 528.1 298 85.6
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.8e-146 522.7 300 85.0
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.4e-146 522.3 299 85.6
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 4.1e-146 521.5 299 85.6
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 4.1e-146 521.5 298 83.9
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 4.1e-146 521.5 298 84.6
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 5.4e-146 521.2 300 85.7
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 5.4e-146 521.2 300 83.7
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.9e-144 515.0 299 84.3
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 3.9e-144 515.0 300 84.3
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 5.0e-144 514.6 298 84.2
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 8.6e-144 513.8 302 83.4
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 7.3e-143 510.8 298 83.2
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.6e-142 509.6 298 82.2
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.8e-141 506.1 298 82.2
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 2.3e-141 505.8 298 81.9
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 5.2e-141 504.6 298 82.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 6.8e-141 504.2 301 82.1
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.2e-140 503.4 298 81.9
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 9.8e-140 500.4 298 81.2
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 1.3e-139 500.0 299 81.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.7e-139 499.6 298 81.2
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 2.2e-139 499.2 300 82.0
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 2.2e-139 499.2 298 80.9
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 2.2e-139 499.2 299 82.3
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 8.3e-139 497.3 298 80.9
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 8.3e-139 497.3 299 81.3
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.4e-138 496.5 298 79.5
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.9e-138 496.1 298 79.9
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 2.4e-138 495.7 298 80.2
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 4.1e-138 495.0 297 79.5
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 4.1e-138 495.0 331 75.2
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 9.2e-138 493.8 298 79.9
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 9.2e-138 493.8 293 81.2
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 2.7e-137 492.3 299 79.6
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 2.7e-137 492.3 292 81.2
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.7e-137 492.3 298 80.2
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 6.0e-137 491.1 298 78.5
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.0e-136 490.3 298 79.2
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.3e-136 490.0 300 81.0
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.3e-136 490.0 301 80.1
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.7e-136 489.6 329 73.6
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.7e-136 489.6 298 79.9
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.3e-136 489.2 298 79.2
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.3e-136 489.2 298 79.9
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.0e-136 488.8 282 83.7
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 3.0e-136 488.8 299 79.3
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 3.0e-136 488.8 300 80.3
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 3.9e-136 488.4 290 79.3
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 3.9e-136 488.4 298 78.5
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 5.0e-136 488.0 301 79.4
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 1.1e-135 486.9 293 79.5
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 2.5e-135 485.7 297 77.8
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 3.3e-135 485.3 298 78.9
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 7.3e-135 484.2 302 80.1
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 7.3e-135 484.2 298 78.9
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.6e-134 483.0 298 78.9
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 6.2e-134 481.1 302 77.8
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 1.4e-133 479.9 298 77.9
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 4.0e-133 478.4 301 77.1
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.7e-131 473.0 281 83.3
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 2.2e-131 472.6 291 78.4
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 2.2e-131 472.6 291 78.4
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 2.2e-131 472.6 291 78.4
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 2.2e-131 472.6 291 78.4
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 3.7e-131 471.9 291 78.0
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.7e-131 471.9 298 76.8
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 4.9e-131 471.5 291 78.4
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 4.9e-131 471.5 298 77.5
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 7.1e-130 467.6 300 76.7
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.6e-129 466.5 333 70.9
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 3.5e-129 465.3 298 76.8
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.0e-128 463.8 310 74.2
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 1.3e-128 463.4 298 75.2
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.7e-128 463.0 298 74.5
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 4.7e-126 454.9 268 84.3
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 8.1e-126 454.1 294 73.8
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 8.1e-126 454.1 298 76.8
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 8.9e-125 450.7 249 85.1
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 2.2e-123 446.0 279 79.9
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 2.9e-123 445.7 239 88.3
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 3.2e-122 442.2 270 81.5
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.7e-121 439.1 237 86.5
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 7.3e-119 431.0 296 72.6
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 9.6e-119 430.6 294 70.1
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 5.2e-117 424.9 291 72.2
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 2.7e-113 412.5 267 73.4
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.0e-112 409.1 247 80.2
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 3.3e-111 405.6 241 79.7
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 8.1e-110 401.0 222 86.0
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 4.0e-101 372.1 238 76.5
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.9e-95 353.2 293 58.7
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 5.8e-92 341.7 289 58.8
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.3e-91 340.5 286 58.7
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.2e-90 335.9 411 48.4
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 9.6e-87 324.3 282 64.2
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 2.8e-86 322.8 208 75.0
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.7e-72 275.0 258 62.4
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 1.3e-67 260.8 272 52.2
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 2.2e-59 233.4 153 77.8
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 5.2e-56 222.2 291 40.5
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 8.2e-54 214.9 223 49.3
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.4e-53 214.2 119 86.6
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 1.6e-52 210.7 195 56.9
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 6.5e-51 205.3 117 77.8
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 1.6e-44 184.1 224 50.4
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.6e-41 174.1 175 55.4
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.0e-36 157.1 235 42.6
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 3.3e-34 149.8 111 65.8
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.0e-27 128.3 73 80.8
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 2.8e-25 120.2 82 72.0
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 3.9e-19 99.8 52 88.5
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.3e-18 96.3 54 79.6
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.1e-17 94.0 55 83.6
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 3.6e-17 93.2 60 73.3
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 5.2e-16 89.4 52 75.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 6.8e-16 89.0 190 36.8
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-14 84.7 157 35.0
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 3.2e-13 80.1 54 72.2
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 3.2e-13 80.1 59 71.2
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 7.1e-13 79.0 147 36.7
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 3.1e-08 63.5 173 29.5
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 6.8e-08 62.4 176 30.7
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 2.0e-07 60.8 111 36.9
Potri.010G239500 Populus trichocarpa HOM05D005598 ORTHO05D006587 2.0e-07 60.8 59 55.9
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 2.6e-07 60.5 183 27.9
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 3.4e-07 60.1 164 29.3
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 4.4e-07 59.7 83 47.0
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 9.9e-07 58.5 54 59.3
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 1.7e-06 57.8 71 39.4
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 1.7e-06 57.8 28 85.7
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 3.8e-06 56.6 203 26.6
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 6.4e-06 55.8 42 66.7
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 8.4e-06 55.5 48 62.5


User provided reference genes

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