Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 2.5e-192 675.2 336 100.0
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 4.9e-164 581.3 338 86.1
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.4e-163 579.7 338 86.1
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.4e-147 526.6 359 75.2
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.1e-146 522.7 334 78.7
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.7e-146 522.3 334 78.4
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.7e-146 522.3 339 78.5
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 2.5e-144 515.8 338 76.9
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.3e-144 515.4 334 78.1
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 4.3e-144 515.0 334 78.1
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 5.9e-141 504.6 333 75.4
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.3e-140 503.4 338 74.6
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.9e-139 499.6 378 69.3
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 3.2e-139 498.8 340 74.7
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 7.2e-139 497.7 333 74.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 9.4e-139 497.3 331 74.9
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 6.1e-138 494.6 338 73.7
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 3.0e-137 492.3 338 72.5
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 6.7e-137 491.1 338 74.0
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 1.5e-136 490.0 336 72.9
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 5.7e-136 488.0 332 74.7
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 9.7e-136 487.3 335 73.1
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.7e-135 486.5 335 72.8
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 2.8e-135 485.7 336 72.9
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 3.7e-135 485.3 338 73.4
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 4.8e-135 485.0 343 73.2
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 6.3e-135 484.6 338 71.3
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.4e-134 483.4 332 73.2
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 3.1e-134 482.3 334 71.3
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.2e-133 480.3 336 71.7
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.5e-133 478.4 335 72.2
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 5.9e-133 478.0 337 71.2
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.0e-132 477.2 336 72.0
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.3e-132 476.9 336 71.7
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.1e-131 473.8 335 70.1
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 5.5e-131 471.5 339 71.4
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.2e-130 470.3 337 71.8
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 1.6e-130 469.9 335 69.9
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 2.1e-130 469.5 339 71.7
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.6e-130 468.8 350 68.9
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.6e-130 468.8 335 71.0
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 4.7e-130 468.4 339 70.8
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.0e-129 467.2 339 69.3
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.4e-129 466.8 338 70.7
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 6.7e-129 464.5 337 70.3
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 1.5e-128 463.4 338 70.4
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 5.7e-128 461.5 339 68.4
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 7.4e-128 461.1 339 70.2
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.3e-127 460.3 339 68.1
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 3.7e-127 458.8 338 69.5
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 6.3e-127 458.0 332 69.6
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 3.5e-125 452.2 339 67.8
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.1e-123 447.2 335 68.4
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.9e-123 446.4 323 74.0
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.2e-123 444.5 339 67.3
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.2e-123 444.5 339 67.3
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 7.2e-123 444.5 335 68.4
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.6e-122 443.4 336 66.1
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 3.6e-122 442.2 336 67.0
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.4e-121 440.3 333 66.7
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.4e-121 440.3 332 68.1
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.4e-121 440.3 332 67.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 6.3e-119 431.4 333 66.7
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 5.3e-118 428.3 345 63.2
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 9.1e-118 427.6 332 64.8
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 3.5e-117 425.6 336 64.6
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 2.9e-116 422.5 336 65.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 8.5e-116 421.0 334 66.2
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.9e-115 419.9 334 65.9
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.2e-114 417.2 294 71.8
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 5.4e-110 401.7 344 60.5
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 7.7e-109 397.9 336 61.3
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.7e-108 396.7 335 61.5
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 2.9e-108 396.0 336 61.0
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 6.6e-108 394.8 339 59.6
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.8e-106 389.4 336 61.0
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.8e-106 389.4 336 61.0
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 8.0e-106 387.9 330 61.5
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.0e-105 387.5 336 58.0
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 6.8e-105 384.8 330 61.2
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 8.9e-105 384.4 336 60.1
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.2e-104 384.0 330 60.9
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-104 384.0 304 68.1
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.0e-104 383.3 336 60.7
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 4.4e-104 382.1 338 59.8
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.0e-101 373.2 308 62.0
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 4.5e-101 372.1 332 59.0
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 2.9e-100 369.4 333 58.3
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 5.6e-99 365.2 338 57.7
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.1e-98 363.2 357 55.2
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.8e-97 360.1 336 56.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 3.1e-97 359.4 336 58.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.5e-96 357.1 247 75.7
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 6.0e-93 345.1 336 55.7
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.0e-92 344.4 338 55.9
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 4.0e-81 305.8 246 66.3
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 4.4e-80 302.4 335 50.4
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 3.0e-76 289.7 273 56.0
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.8e-74 283.1 358 45.3
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.7e-71 273.9 345 45.2
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 2.4e-62 243.4 161 73.9
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 1.2e-61 241.1 462 35.5
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.1e-59 234.6 314 42.7
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 1.4e-57 227.6 333 40.5
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 5.4e-54 215.7 188 61.2
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 5.4e-54 215.7 150 70.7
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.6e-53 214.2 164 67.7
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 4.3e-51 206.1 349 37.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.9e-46 190.7 180 60.0
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 7.1e-38 162.2 151 58.3
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.3e-36 157.9 125 62.4
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 8.7e-36 155.2 150 51.3
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-35 154.5 170 46.5
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 9.0e-33 145.2 153 49.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.3e-23 114.8 81 65.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 2.7e-21 107.1 63 76.2
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 4.7e-21 106.3 74 67.6
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 5.1e-20 102.8 133 48.9
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.1e-19 101.7 60 85.0
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 3.7e-18 96.7 132 40.9
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 8.2e-18 95.5 75 61.3
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 1.1e-09 68.6 57 54.4
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 1.4e-09 68.2 59 66.1
SHI28985 Sapria himalayana HOM05D000023 ORTHO05D000014 7.7e-08 62.4 79 46.8
Ca_29090_v3 Cicer arietinum L. HOM05D000582 ORTHO05D034183 4.2e-06 56.6 121 32.2
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 9.4e-06 55.5 83 42.2


User provided reference genes

Program Settings