Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 9.8e-101 370.2 190 100.0
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 4.7e-87 324.7 190 88.4
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 7.0e-83 310.8 188 86.2
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 7.8e-82 307.4 188 83.0
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 3.0e-81 305.4 188 81.9
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.5e-80 302.4 188 81.9
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 4.7e-79 298.1 187 82.4
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 6.2e-79 297.7 187 81.8
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 4.0e-78 295.0 189 81.5
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.2e-78 294.7 187 80.2
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 6.8e-78 294.3 188 80.3
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 8.9e-78 293.9 189 81.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 3.4e-77 292.0 188 79.8
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 5.8e-77 291.2 188 78.7
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.3e-76 290.0 190 79.5
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.7e-76 289.7 189 81.5
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.2e-76 289.3 189 78.3
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.9e-76 288.9 189 78.3
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.7e-76 288.5 193 78.2
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 6.4e-76 287.7 188 79.3
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.4e-76 287.7 188 79.3
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.4e-76 287.7 188 79.3
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.3e-76 287.3 191 80.1
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.3e-76 287.3 191 80.1
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 8.3e-76 287.3 188 79.8
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.4e-75 286.6 186 81.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.4e-75 286.6 187 80.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.9e-75 286.2 188 77.7
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 3.2e-75 285.4 187 80.2
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.2e-75 283.9 189 78.3
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 9.2e-75 283.9 191 78.5
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.6e-74 283.1 188 77.1
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.1e-74 282.7 189 77.8
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 3.5e-74 282.0 188 77.7
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 6.0e-74 281.2 187 78.6
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.0e-73 280.4 189 78.3
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.0e-73 280.4 188 76.6
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.3e-73 280.0 188 78.2
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.3e-73 280.0 186 78.5
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.7e-73 279.6 191 78.5
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.7e-73 279.6 188 77.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.3e-73 279.3 188 78.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 5.1e-73 278.1 189 77.8
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 5.1e-73 278.1 189 77.8
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 6.6e-73 277.7 186 78.0
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 6.6e-73 277.7 188 76.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.1e-72 276.9 188 75.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.5e-72 276.6 180 78.9
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.5e-72 275.8 190 78.4
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.5e-72 275.8 195 75.9
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 2.5e-72 275.8 189 78.8
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 7.3e-72 274.2 187 77.0
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 9.5e-72 273.9 191 76.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 2.1e-71 272.7 187 74.3
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 3.6e-71 271.9 187 76.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.4e-70 270.0 192 73.4
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.8e-70 269.6 189 74.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 2.3e-70 269.2 191 75.4
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.1e-70 268.9 174 81.0
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 4.0e-70 268.5 188 72.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 5.2e-70 268.1 189 76.2
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 8.9e-70 267.3 189 73.0
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 8.9e-70 267.3 189 76.7
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 4.4e-69 265.0 217 65.4
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 4.4e-69 265.0 186 75.8
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 4.4e-69 265.0 191 75.4
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.8e-69 264.6 190 72.1
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.3e-68 263.5 189 75.7
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.2e-68 262.7 189 75.7
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.2e-68 262.7 190 72.1
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 3.7e-68 261.9 185 71.9
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 3.7e-68 261.9 186 73.7
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.9e-68 261.5 190 71.6
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 8.4e-68 260.8 170 81.2
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 8.4e-68 260.8 189 75.1
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.1e-67 258.5 172 79.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 9.2e-67 257.3 188 68.6
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.1e-66 256.1 188 69.1
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.6e-66 255.0 190 71.1
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 7.8e-66 254.2 226 62.4
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.3e-65 253.4 190 71.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.3e-65 253.4 205 67.3
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 5.1e-65 251.5 191 69.1
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-64 250.4 193 71.5
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-64 250.4 193 71.5
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-64 250.4 192 70.3
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.9e-64 249.6 186 72.6
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.5e-64 249.2 191 70.2
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.5e-64 249.2 191 70.2
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.5e-64 249.2 191 70.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.5e-64 249.2 195 67.2
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 7.3e-64 247.7 190 70.0
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 7.3e-64 247.7 190 70.0
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 9.6e-64 247.3 190 69.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.2e-63 246.9 190 71.6
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 2.1e-63 246.1 188 69.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.1e-62 243.8 189 69.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 1.4e-62 243.4 182 71.4
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.8e-62 243.0 161 77.0
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.8e-62 243.0 185 70.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 3.1e-62 242.3 188 69.7
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.0e-61 239.6 192 68.2
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 3.4e-61 238.8 185 69.7
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.8e-61 238.0 216 59.7
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 7.6e-61 237.7 199 66.3
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.7e-60 236.5 144 84.7
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.1e-59 233.8 124 95.2
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.9e-59 233.0 194 67.0
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 2.4e-59 232.6 188 68.6
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 5.4e-59 231.5 124 94.4
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 9.3e-59 230.7 147 81.0
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.2e-58 230.3 206 61.2
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.6e-58 229.9 159 74.8
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-57 226.1 135 84.4
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 3.0e-57 225.7 190 66.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 6.6e-57 224.6 191 68.6
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 8.7e-57 224.2 148 77.7
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 8.7e-57 224.2 155 73.5
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-56 223.8 148 77.0
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.1e-56 223.8 148 77.0
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 9.6e-56 220.7 197 62.4
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-55 220.3 164 72.6
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 3.6e-55 218.8 123 88.6
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.4e-54 216.9 197 62.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.4e-54 216.1 189 64.6
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.5e-53 213.4 188 64.9
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.4e-53 211.8 123 86.2
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 9.9e-53 210.7 158 69.0
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.3e-52 210.3 122 84.4
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 3.8e-52 208.8 158 68.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 6.4e-52 208.0 199 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.9e-51 206.5 130 80.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.2e-51 205.7 183 60.1
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 9.3e-51 204.1 145 74.5
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 9.3e-51 204.1 125 80.8
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.2e-50 203.8 143 76.9
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.6e-50 203.4 176 61.4
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 2.7e-50 202.6 145 73.1
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.7e-50 202.6 141 74.5
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 3.5e-50 202.2 145 73.1
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 6.0e-50 201.4 183 59.0
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 5.6e-48 194.9 122 79.5
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-45 186.0 194 56.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.3e-41 172.9 190 54.2
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.5e-40 170.2 192 53.6
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.3e-40 169.1 189 54.5
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.6e-39 166.8 123 67.5
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 4.8e-39 165.2 140 63.6
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 4.0e-38 162.2 191 53.4
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 6.9e-38 161.4 192 50.5
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 7.6e-37 157.9 122 62.3
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 3.8e-36 155.6 123 63.4
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.5e-35 152.9 113 71.7
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.2e-35 152.5 177 48.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.5e-34 149.1 161 50.9
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.9e-33 145.6 125 66.4
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 5.1e-33 145.2 164 51.2
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 4.3e-32 142.1 154 54.5
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.3e-31 140.6 97 75.3
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-29 134.0 79 82.3
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.7e-28 130.2 175 43.4
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.5e-26 122.5 67 91.0
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.1e-25 118.6 67 89.6
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.9e-24 116.7 67 88.1
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 3.2e-19 99.4 130 49.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 5.5e-19 98.6 130 49.2
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 9.4e-19 97.8 69 71.0
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.0e-17 94.4 61 75.4
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.4e-17 94.0 64 71.9
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 3.0e-17 92.8 53 81.1
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 6.7e-17 91.7 53 79.2
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.5e-16 89.7 46 93.5
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.2e-15 86.7 124 39.5
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 2.2e-12 76.6 82 51.2
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 3.2e-11 72.8 104 45.2
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.4e-09 67.4 50 68.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 8.8e-09 64.7 61 55.7
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.5e-08 63.9 61 55.7
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 9.7e-08 61.2 61 54.1
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 3.7e-07 59.3 29 96.6


User provided reference genes

Program Settings