Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 3.2e-224 781.6 438 100.0
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 2.2e-212 742.3 438 94.5
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 6.1e-207 724.2 439 93.6
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 7.3e-200 700.7 435 89.4
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 2.6e-197 692.2 436 88.3
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 7.5e-197 690.6 438 86.8
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 8.3e-196 687.2 436 86.7
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.4e-195 686.4 434 87.8
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 7.0e-195 684.1 443 85.3
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 1.2e-194 683.3 438 86.8
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 4.6e-194 681.4 436 87.2
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 5.6e-192 674.5 442 88.9
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 7.3e-192 674.1 434 85.0
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 2.1e-191 672.5 458 83.8
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 2.8e-191 672.2 424 89.2
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 1.4e-190 669.8 436 85.3
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 1.4e-190 669.8 438 84.2
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 3.1e-190 668.7 436 86.2
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 5.2e-190 667.9 438 84.7
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 1.2e-189 666.8 436 85.8
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 1.2e-189 666.8 436 85.6
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 1.2e-189 666.8 440 84.3
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 4.4e-189 664.8 435 86.0
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 5.8e-189 664.5 438 84.0
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 9.9e-189 663.7 440 84.1
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.1e-187 660.2 438 84.5
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 5.4e-187 657.9 425 86.6
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 7.1e-187 657.5 433 84.1
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 1.3e-185 653.3 433 84.8
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 9.5e-184 647.1 459 71.0
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.2e-183 646.7 441 83.9
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 3.6e-183 645.2 437 78.5
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 1.8e-182 642.9 432 83.1
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 2.4e-182 642.5 438 82.9
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 2.0e-181 639.4 406 86.5
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 9.2e-179 630.6 438 81.1
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 2.1e-178 629.4 434 82.0
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 7.8e-178 627.5 454 69.4
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 1.3e-177 626.7 450 79.6
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 5.1e-177 624.8 439 79.0
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 9.6e-176 620.5 438 76.9
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 6.2e-175 617.8 435 80.7
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 1.1e-174 617.1 434 76.7
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 6.9e-174 614.4 436 80.7
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 2.0e-173 612.8 405 84.4
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 2.0e-173 612.8 431 79.4
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 9.9e-173 610.5 433 71.1
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 4.9e-172 608.2 436 78.4
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 7.1e-171 604.4 598 55.2
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.2e-170 603.6 556 58.6
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 6.0e-170 601.3 436 78.9
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 6.2e-167 591.3 408 83.1
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 6.9e-166 587.8 465 74.6
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.2e-165 587.0 433 78.1
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 1.5e-165 586.6 429 78.1
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 6.4e-164 581.3 434 77.9
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 6.0e-162 574.7 455 73.8
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 7.1e-155 551.2 431 73.1
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 7.1e-155 551.2 432 73.8
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 9.3e-155 550.8 437 73.5
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 2.7e-154 549.3 437 71.9
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 4.6e-154 548.5 469 60.8
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 7.9e-154 547.7 498 62.2
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 1.3e-153 547.0 431 73.8
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 5.1e-153 545.0 435 63.2
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 1.3e-151 540.4 396 78.0
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.6e-151 540.0 438 65.5
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 2.4e-150 536.2 429 71.6
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.2e-149 533.9 396 66.2
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 1.5e-149 533.5 447 71.4
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 2.2e-148 529.6 431 71.7
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 4.9e-148 528.5 470 68.5
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 4.9e-148 528.5 426 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 1.9e-147 526.6 432 60.6
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 1.9e-147 526.6 441 71.2
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 1.9e-147 526.6 459 60.6
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 3.2e-147 525.8 441 71.2
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 4.2e-147 525.4 438 71.0
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 9.3e-147 524.2 334 88.6
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 7.4e-144 514.6 438 61.6
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 3.7e-143 512.3 436 60.8
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 8.2e-143 511.1 436 60.8
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 2.4e-142 509.6 335 77.3
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 1.5e-141 506.9 386 78.5
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 2.9e-140 502.7 441 67.1
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 5.1e-137 491.9 436 66.5
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 5.7e-136 488.4 268 88.1
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 7.4e-136 488.0 449 62.1
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 2.2e-124 449.9 436 65.6
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 7.4e-120 434.9 426 63.8
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 3.2e-115 419.5 438 56.6
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 5.4e-102 375.6 330 60.3
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 2.4e-94 350.1 271 66.1
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 1.0e-92 344.7 292 74.0
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 1.1e-75 288.1 242 64.5
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 1.5e-72 277.7 220 80.5
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.5e-67 261.2 406 40.1
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 6.8e-65 252.3 143 81.8
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.6e-61 241.1 189 74.6
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 1.2e-48 198.4 348 37.1
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 2.2e-47 194.1 163 81.6
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 5.1e-44 183.0 147 88.4
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 1.1e-41 175.3 187 56.7
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 3.4e-40 170.2 188 66.5
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 3.8e-39 166.8 129 71.3
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 1.9e-35 154.5 95 76.8
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 9.0e-33 145.6 91 80.2
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.6e-29 134.8 101 70.3
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 1.8e-28 131.3 101 70.3
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 6.3e-26 122.9 129 58.9
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 3.4e-24 117.1 116 50.0
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 5.5e-22 109.8 57 78.9
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 3.0e-20 104.0 144 41.0
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 6.7e-20 102.8 61 80.3
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 1.5e-19 101.7 95 57.9
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 5.3e-17 93.2 75 62.7
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 2.6e-16 90.9 50 82.0
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 2.2e-15 87.8 62 77.4
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 1.4e-12 78.6 41 82.9
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 2.6e-11 74.3 40 80.0
DCAR_024291 Daucus carota HOM05D003335 ORTHO05D003853 5.7e-11 73.2 180 26.7
HanXRQChr11g0342461 Helianthus annuus HOM05D003335 ORTHO05D003853 1.8e-09 68.2 180 26.1
Lsat_1_v5_gn_1_75641 Lactuca sativa HOM05D003335 ORTHO05D003853 3.1e-09 67.4 180 26.1
MSTRG.9861 Avicennia marina HOM05D003335 ORTHO05D003853 5.3e-09 66.6 184 25.5
Thhalv10021071m.g Eutrema salsugineum HOM05D003006 ORTHO05D003438 4.5e-08 63.5 230 24.8
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 5.9e-08 63.2 182 25.3
PSO170G2454 Papaver somniferum HOM05D001715 ORTHO05D003849 1.0e-07 62.4 190 24.7
Gohir.D03G066000 Gossypium hirsutum HOM05D003006 ORTHO05D003438 1.3e-07 62.0 213 23.9
Gorai.002G056400 Gossypium raimondii HOM05D003006 ORTHO05D003438 1.3e-07 62.0 213 23.9
Hma1.2p1_0736F.1_g210710 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 1.7e-07 61.6 205 23.9
CARHR090700 Cardamine hirsuta HOM05D003006 ORTHO05D003438 2.2e-07 61.2 217 24.4
AagrBONN_evm.TU.Sc2ySwM_228.5273 Anthoceros agrestis HOM05D004669 ORTHO05D005767 2.9e-07 60.8 170 25.3
Gohir.A02G123800 Gossypium hirsutum HOM05D003006 ORTHO05D003438 2.9e-07 60.8 213 23.9
PSO170G2486 Papaver somniferum HOM05D001715 ORTHO05D003849 5.0e-07 60.1 188 24.5
PSO170G5376 Papaver somniferum HOM05D001715 ORTHO05D003849 5.0e-07 60.1 188 24.5
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 8.5e-07 59.3 170 25.9
Dinv38082 Davidia involucrata HOM05D003006 ORTHO05D003438 8.5e-07 59.3 223 23.8
Thecc.04G263400 Theobroma cacao HOM05D003335 ORTHO05D003853 8.5e-07 59.3 182 24.7
THA.LOC104801044 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 1.1e-06 58.9 213 23.5
Gohir.A09G227600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 1.5e-06 58.5 182 24.7
PSO081G0127 Papaver somniferum HOM05D001715 ORTHO05D003849 1.5e-06 58.5 179 25.1
Cpa.g.sc248.8 Carica papaya HOM05D001771 ORTHO05D001876 2.5e-06 57.8 121 28.1
Medtr4g088675 Medicago truncatula HOM05D000836 ORTHO05D000709 2.5e-06 57.8 125 30.4
ATR0021G051 Amborella trichopoda HOM05D002332 ORTHO05D002509 3.2e-06 57.4 209 25.8
Duzib151G0619 Durio zibethinus HOM05D003335 ORTHO05D003853 3.2e-06 57.4 182 24.2
Gorai.006G251300 Gossypium raimondii HOM05D003335 ORTHO05D003853 3.2e-06 57.4 182 24.2
Prupe.1G047500 Prunus persica HOM05D003335 ORTHO05D003853 3.2e-06 57.4 180 23.9
RcHm_v2.0_Chr6g0308111 Rosa chinensis HOM05D002332 ORTHO05D002509 3.2e-06 57.4 199 23.6
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 4.2e-06 57.0 82 43.9
CiPaw.16G042300 Carya illinoinensis HOM05D002332 ORTHO05D002509 4.2e-06 57.0 206 23.3
FAN20G1644 Fragaria x ananassa HOM05D002332 ORTHO05D002509 4.2e-06 57.0 205 24.4
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 4.2e-06 57.0 199 21.6
Haze_18030 Corylus avellana HOM05D002332 ORTHO05D002509 5.5e-06 56.6 210 22.4
FvH4_2g34270 Fragaria vesca HOM05D002332 ORTHO05D002509 5.5e-06 56.6 205 24.4
QL02p086475 Quercus lobata HOM05D000836 ORTHO05D000709 5.5e-06 56.6 208 25.0
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 9.4e-06 55.8 196 27.0
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 9.4e-06 55.8 196 27.0
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 9.4e-06 55.8 196 27.0


User provided reference genes

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