Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 3.8e-187 657.9 308 100.0
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 5.6e-146 521.2 308 79.5
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 5.6e-146 521.2 308 79.5
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 5.6e-146 521.2 308 79.5
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 1.7e-139 499.6 316 76.3
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.3e-138 495.4 308 77.9
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.3e-131 473.4 304 74.3
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 3.3e-130 468.8 303 72.3
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.2e-129 466.8 299 75.9
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 1.6e-129 466.5 304 74.0
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-129 466.5 304 74.3
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.8e-129 465.7 301 75.1
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.8e-129 465.7 301 75.1
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 3.6e-129 465.3 311 71.7
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.8e-128 461.1 300 75.0
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.2e-127 460.3 308 71.8
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 1.5e-127 459.9 319 69.9
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 9.9e-127 457.2 313 69.6
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 5.4e-125 451.4 314 70.7
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 1.6e-124 449.9 315 69.8
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 8.6e-123 444.1 313 67.1
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.9e-122 443.0 313 66.8
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 1.9e-122 443.0 300 71.3
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 5.6e-122 441.4 309 68.6
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.2e-121 440.3 313 66.5
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.8e-120 436.4 311 68.5
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 3.1e-120 435.6 305 70.5
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 4.0e-120 435.3 304 68.4
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.5e-119 433.3 301 70.1
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 2.6e-119 432.6 308 68.2
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 4.4e-119 431.8 300 69.7
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 9.9e-119 430.6 298 68.1
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.3e-118 430.3 300 69.0
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.3e-118 430.3 303 68.0
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.7e-118 429.9 310 67.1
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 1.7e-118 429.9 311 66.9
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.9e-118 429.1 305 68.2
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 6.4e-118 427.9 325 65.2
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.4e-117 426.8 316 65.5
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 2.4e-117 426.0 306 66.0
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.1e-117 425.2 304 68.1
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 4.1e-117 425.2 316 65.2
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 9.2e-117 424.1 302 67.5
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.2e-116 423.7 300 69.0
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.1e-116 422.9 301 68.1
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 6.0e-116 421.4 302 66.6
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 7.8e-116 421.0 308 66.9
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.3e-115 419.5 302 67.2
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 2.3e-115 419.5 302 65.2
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 3.9e-115 418.7 302 67.2
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 3.9e-115 418.7 310 65.8
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 3.9e-115 418.7 319 65.8
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 8.7e-115 417.5 292 69.9
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-114 416.8 302 68.5
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.5e-114 416.8 306 65.7
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 5.6e-114 414.8 308 63.6
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.2e-113 413.7 281 71.2
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 2.1e-113 412.9 316 65.2
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 2.8e-113 412.5 301 66.8
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.8e-113 412.5 302 66.6
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 4.7e-113 411.8 304 65.8
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 6.2e-113 411.4 302 66.9
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 3.1e-112 409.1 315 63.2
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 4.0e-112 408.7 302 66.6
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 4.0e-112 408.7 310 64.8
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.2e-111 407.1 267 70.4
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 1.5e-111 406.8 300 64.3
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.5e-111 406.8 300 64.7
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.5e-111 406.8 299 63.9
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.4e-111 405.6 309 63.1
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 7.6e-111 404.4 279 66.3
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 9.9e-111 404.1 278 67.3
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.3e-110 403.7 303 64.0
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 2.9e-110 402.5 300 63.0
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 3.8e-110 402.1 326 64.1
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 4.9e-110 401.7 301 65.4
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 4.9e-110 401.7 301 65.4
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 4.9e-110 401.7 301 65.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 8.4e-110 401.0 321 62.3
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.1e-109 400.6 321 61.7
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 1.1e-109 400.6 314 64.0
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 5.4e-109 398.3 273 67.0
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 1.2e-108 397.1 256 71.5
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 2.1e-108 396.4 294 65.0
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 2.1e-108 396.4 290 63.8
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 3.5e-108 395.6 291 63.6
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 7.8e-108 394.4 330 59.7
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 5.6e-106 388.3 308 63.0
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 1.6e-105 386.7 306 62.1
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.6e-105 386.7 228 75.9
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 2.1e-105 386.3 237 75.1
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 6.2e-105 384.8 271 65.7
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 9.0e-104 380.9 267 65.5
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 1.3e-102 377.1 244 73.0
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 3.8e-102 375.6 302 60.3
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.8e-102 375.6 289 63.7
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.9e-102 375.2 228 77.6
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.4e-101 373.6 301 61.1
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.9e-101 373.2 302 58.9
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 3.2e-101 372.5 303 59.7
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 7.1e-101 371.3 302 59.3
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.5e-100 369.0 299 59.5
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.5e-100 369.0 297 59.3
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 6.0e-100 368.2 301 59.8
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 1.3e-99 367.1 216 76.9
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.8e-99 366.7 273 65.2
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 2.5e-98 362.8 301 59.5
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.4e-96 356.3 293 59.7
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 3.1e-96 355.9 234 69.7
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 6.9e-96 354.8 297 56.9
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 1.5e-95 353.6 195 83.6
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 2.2e-94 349.7 299 56.9
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.4e-93 347.1 295 59.3
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.4e-93 347.1 303 57.1
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.4e-93 347.1 235 66.0
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.4e-93 346.3 305 58.4
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 5.5e-93 345.1 296 59.1
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 7.1e-93 344.7 233 67.8
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.2e-92 344.0 299 55.9
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-92 343.6 299 54.8
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 2.7e-92 342.8 297 56.2
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 6.0e-92 341.7 235 68.1
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.3e-91 340.5 229 65.1
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.5e-90 336.3 296 58.4
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.5e-90 336.3 296 58.4
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.5e-90 336.3 296 58.4
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 3.3e-90 335.9 243 65.0
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 3.3e-90 335.9 209 73.7
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 5.6e-90 335.1 308 53.6
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 7.4e-90 334.7 296 58.1
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.7e-89 332.4 296 57.4
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 3.1e-88 329.3 283 56.5
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 6.9e-88 328.2 304 52.6
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.2e-87 327.4 231 61.9
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 3.4e-87 325.9 296 56.8
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 7.6e-87 324.7 204 74.0
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.2e-85 319.3 305 55.7
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 3.0e-83 312.8 237 65.8
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 1.9e-82 310.1 226 63.3
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 2.2e-81 306.6 228 62.7
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 3.0e-75 286.2 163 79.8
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 8.2e-73 278.1 199 66.3
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 3.1e-72 276.2 219 58.4
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.2e-71 274.2 315 48.3
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.3e-70 270.8 299 52.8
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 1.7e-70 270.4 288 49.3
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 6.5e-70 268.5 282 46.8
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.6e-68 262.7 217 56.7
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 2.3e-67 260.0 229 52.0
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 8.8e-67 258.1 177 72.9
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 9.7e-66 254.6 237 51.5
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 1.3e-65 254.2 290 47.2
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.8e-65 253.1 228 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.8e-64 250.4 229 52.4
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.5e-63 247.3 243 49.4
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.7e-62 243.8 230 50.4
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.2e-60 237.7 230 47.8
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 3.6e-60 236.1 154 75.3
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.0e-58 230.3 226 47.8
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 2.2e-57 226.9 167 61.7
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 6.3e-57 225.3 245 44.5
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 9.1e-56 221.5 308 41.9
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.2e-55 221.1 226 46.9
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.1e-53 214.5 130 73.1
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 3.6e-52 209.5 235 46.8
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 1.4e-51 207.6 195 50.3
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 1.8e-51 207.2 267 42.3
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 4.1e-48 196.1 317 35.0
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.7e-46 190.7 152 59.2
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.2e-46 190.3 221 43.0
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.7e-42 175.6 109 71.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.6e-36 156.4 97 69.1
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-35 153.7 115 65.2
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-27 127.1 92 63.0
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 7.0e-16 89.0 49 79.6
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 5.1e-14 82.8 96 46.9
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.5e-13 81.3 74 47.3
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 2.1e-07 60.8 43 62.8


User provided reference genes

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