Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 3.6e-101 371.7 204 100.0
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 2.7e-72 275.8 201 79.6
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 6.9e-68 261.2 203 74.4
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 6.9e-68 261.2 203 74.4
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.5e-67 260.0 203 73.9
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 3.4e-67 258.8 203 74.4
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 7.6e-67 257.7 202 74.8
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.7e-66 256.5 203 74.9
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.9e-66 255.0 204 73.0
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 4.2e-65 251.9 203 72.4
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 9.3e-65 250.8 203 72.4
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 9.3e-65 250.8 205 71.7
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.2e-64 250.4 203 72.9
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.6e-64 250.0 204 73.0
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 1.6e-64 250.0 203 72.9
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.9e-63 245.4 206 71.4
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 3.9e-63 245.4 201 71.6
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 8.7e-63 244.2 203 71.4
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 3.3e-62 242.3 200 69.0
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 5.6e-62 241.5 205 70.2
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.6e-61 240.0 203 68.0
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.6e-61 240.0 204 71.1
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.8e-61 239.2 203 68.0
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.1e-61 237.7 203 67.0
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.1e-61 237.7 203 67.0
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 1.1e-60 237.3 204 68.6
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.4e-60 236.9 202 70.3
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.8e-60 236.5 204 67.6
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 2.4e-60 236.1 204 69.1
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.4e-60 236.1 203 69.5
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 3.1e-60 235.7 203 69.5
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 9.0e-60 234.2 207 67.1
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 9.0e-60 234.2 199 69.8
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.2e-59 233.8 205 70.2
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 1.2e-59 233.8 204 67.2
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-59 233.8 204 67.2
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.5e-59 233.4 204 67.6
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 1.5e-59 233.4 205 69.8
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 2.0e-59 233.0 201 71.6
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 2.6e-59 232.6 204 69.1
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 3.4e-59 232.3 208 68.3
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 5.8e-59 231.5 205 67.3
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 7.6e-59 231.1 204 66.7
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 9.9e-59 230.7 206 70.4
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 9.9e-59 230.7 206 70.4
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 9.9e-59 230.7 204 68.1
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 9.9e-59 230.7 201 68.2
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 2.2e-58 229.6 199 68.3
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 3.8e-58 228.8 206 65.5
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.1e-57 227.3 203 70.0
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.4e-57 226.9 204 65.7
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 4.2e-57 225.3 209 67.0
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 7.1e-57 224.6 210 66.2
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.6e-56 223.4 204 68.1
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.1e-56 223.0 203 65.0
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 3.5e-56 222.2 203 65.0
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 4.6e-56 221.9 203 65.5
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 6.0e-56 221.5 205 65.9
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.0e-55 220.7 206 66.0
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 1.3e-55 220.3 206 66.0
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.3e-55 220.3 209 66.5
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.8e-55 219.9 205 65.4
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.8e-55 219.9 206 68.0
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 2.3e-55 219.5 208 64.4
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 5.1e-55 218.4 202 65.8
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 6.7e-55 218.0 192 67.2
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 6.7e-55 218.0 202 64.9
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 8.7e-55 217.6 205 64.4
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 1.9e-54 216.5 213 62.4
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 7.4e-54 214.5 203 63.1
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.3e-53 213.8 205 61.0
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.3e-53 213.8 205 63.9
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 2.1e-53 213.0 204 65.7
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 2.1e-53 213.0 203 62.6
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 2.1e-53 213.0 205 62.0
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 3.1e-52 209.1 202 61.4
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 3.1e-52 209.1 207 64.3
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 4.0e-52 208.8 205 61.5
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.2e-51 207.2 207 60.9
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.0e-51 206.5 209 63.6
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 2.6e-51 206.1 208 63.5
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.4e-51 205.7 205 60.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 3.4e-51 205.7 192 64.6
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 5.8e-51 204.9 200 60.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 7.6e-51 204.5 201 60.2
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.3e-50 203.8 169 72.2
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.3e-50 203.8 209 62.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 2.2e-50 203.0 202 59.4
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 6.5e-50 201.4 201 63.2
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 6.5e-50 201.4 205 59.0
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.4e-49 200.3 206 60.2
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.4e-49 200.3 208 59.1
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 2.5e-49 199.5 203 58.6
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.2e-49 199.1 206 60.7
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 4.6e-48 195.3 203 61.6
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 6.7e-47 191.4 204 58.8
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 1.5e-46 190.3 205 59.0
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 3.3e-46 189.1 214 58.4
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.4e-46 188.0 204 58.8
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.3e-45 187.2 214 57.5
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.1e-45 186.4 205 58.0
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 3.7e-45 185.7 212 57.1
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 3.7e-45 185.7 212 57.1
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 4.8e-45 185.3 214 57.0
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 4.8e-45 185.3 214 57.0
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 4.8e-45 185.3 214 57.0
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 6.3e-45 184.9 201 58.7
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.4e-44 183.7 204 57.4
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 4.1e-44 182.2 221 55.2
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 6.9e-44 181.4 205 57.6
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 9.0e-44 181.0 214 55.6
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 9.0e-44 181.0 214 55.6
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.2e-43 180.6 199 55.3
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.2e-43 180.6 221 55.7
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.2e-43 180.6 203 59.1
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 1.5e-43 180.3 216 55.6
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 3.4e-43 179.1 213 57.3
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 5.9e-43 178.3 199 55.8
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.0e-42 177.6 205 56.6
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.7e-42 176.8 211 55.9
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.2e-42 176.4 202 57.4
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.2e-42 176.4 163 62.6
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 6.5e-42 174.9 210 55.2
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 8.5e-42 174.5 210 55.2
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.9e-41 173.3 165 61.2
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 3.2e-41 172.6 212 55.7
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 3.2e-41 172.6 212 55.2
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.6e-40 170.2 210 53.3
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 4.6e-40 168.7 206 54.4
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.9e-38 163.3 202 52.5
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 5.7e-38 161.8 203 49.8
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 3.7e-37 159.1 184 53.8
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 3.1e-36 156.0 180 62.2
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.7e-34 150.2 208 49.0
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 2.5e-33 146.4 177 54.2
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.7e-32 142.9 203 48.3
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 4.6e-32 142.1 200 46.0
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 6.1e-32 141.7 208 45.2
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 5.1e-31 138.7 117 65.0
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 6.7e-31 138.3 157 48.4
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.7e-30 135.2 157 45.9
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 9.7e-30 134.4 157 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.0e-26 124.4 155 47.7
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 2.2e-26 123.2 118 66.1
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 1.4e-25 120.6 144 45.8
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.7e-21 107.1 164 41.5
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 5.3e-20 102.1 136 50.7
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 7.0e-20 101.7 156 49.4
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 2.2e-18 96.7 180 39.4
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 3.8e-18 95.9 129 48.8
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 8.5e-18 94.7 143 44.1
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-16 90.9 60 71.7
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 1.6e-16 90.5 81 65.4
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 4.7e-16 89.0 193 37.3
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 1.8e-15 87.0 129 48.1
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.0e-15 86.3 129 45.7
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.0e-15 85.9 110 48.2
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 9.7e-14 81.3 126 42.9
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 3.1e-12 76.3 91 58.2
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 3.6e-08 62.8 121 33.1
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 4.0e-07 59.3 138 32.6


User provided reference genes

Program Settings