Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 2.4e-273 945.3 631 100.0
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 1.4e-239 833.2 631 86.2
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.8e-239 832.8 631 83.2
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 1.4e-223 780.0 635 79.4
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 5.3e-220 768.1 640 78.1
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 8.3e-213 744.2 639 75.9
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 8.6e-210 734.2 634 74.9
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.2e-206 723.8 634 75.1
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.0e-206 723.0 636 75.0
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 9.5e-201 704.1 634 74.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.2e-200 703.7 637 72.1
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-200 703.4 637 72.2
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.8e-199 699.9 637 71.7
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 1.8e-199 699.9 690 68.6
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.9e-197 692.6 646 69.0
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 4.9e-197 691.8 638 71.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.3e-194 683.7 544 77.8
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.1e-192 676.4 631 73.4
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 8.0e-192 674.5 640 74.7
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 3.4e-190 669.1 501 78.4
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.3e-189 667.2 639 68.9
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 4.9e-189 665.2 637 70.3
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.9e-189 665.2 638 70.4
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 6.4e-189 664.8 639 71.0
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.5e-187 659.1 657 74.3
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 4.6e-187 658.7 640 68.9
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.5e-185 653.7 637 73.3
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 2.5e-185 652.9 529 75.6
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 4.3e-185 652.1 636 72.5
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 7.3e-185 651.4 527 75.5
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.8e-184 649.4 648 71.1
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 3.1e-183 646.0 640 70.0
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 2.6e-182 642.9 640 62.7
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 9.9e-182 641.0 637 63.4
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.2e-181 639.8 638 67.6
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 2.9e-181 639.4 640 69.2
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 1.4e-180 637.1 637 73.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.6e-179 633.6 529 68.1
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 2.7e-179 632.9 642 67.1
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 4.6e-179 632.1 637 72.7
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.0e-178 630.9 643 67.0
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 6.6e-178 628.2 529 68.2
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 1.5e-177 627.1 673 65.8
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.2e-176 624.0 631 68.6
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 6.2e-176 621.7 530 72.8
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.2e-174 617.5 643 65.2
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.2e-174 617.5 637 59.7
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 2.6e-174 616.3 641 65.4
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.6e-174 616.3 633 70.5
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 2.9e-173 612.8 629 70.7
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.4e-172 609.8 656 66.5
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 7.1e-172 608.2 637 70.3
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 9.2e-172 607.8 633 66.4
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.2e-171 607.4 639 72.6
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 8.7e-170 601.3 641 67.1
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 8.7e-170 601.3 633 62.6
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.1e-169 600.9 637 67.7
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.9e-169 600.1 691 64.4
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 4.3e-169 599.0 434 76.5
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 6.2e-168 595.1 555 71.5
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 2.4e-167 593.2 634 58.5
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.5e-166 590.5 639 66.2
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.7e-165 587.0 523 70.0
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 4.2e-164 582.4 668 64.8
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 9.3e-164 581.3 525 69.7
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.6e-163 580.5 664 61.3
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 1.3e-162 577.4 539 74.2
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 3.0e-162 576.2 637 67.3
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 3.9e-162 575.9 560 62.0
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 5.1e-162 575.5 634 66.4
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 8.7e-162 574.7 567 68.6
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 3.1e-159 566.2 511 71.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.2e-157 560.1 484 71.7
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 4.2e-156 555.8 637 54.0
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 5.1e-154 548.9 533 62.5
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 4.3e-153 545.8 654 55.7
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.1e-151 541.2 574 62.2
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.4e-151 540.8 506 68.8
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.4e-151 540.0 584 59.8
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 5.3e-151 538.9 563 62.3
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.3e-149 534.3 635 63.6
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 4.9e-149 532.3 547 67.8
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 3.2e-148 529.6 524 61.6
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 2.1e-147 526.9 635 63.3
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.0e-146 524.6 375 84.5
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.9e-145 520.4 661 63.7
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.2e-142 511.1 679 52.3
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.2e-141 506.9 700 53.6
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.3e-138 497.7 562 54.8
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 3.3e-137 493.0 532 60.5
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.4e-135 486.9 637 61.5
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.4e-135 486.9 646 60.4
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 4.5e-134 482.6 449 61.9
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 3.8e-133 479.6 640 59.2
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 1.4e-130 471.1 647 61.7
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 9.7e-129 464.9 640 59.2
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.3e-128 464.5 642 56.5
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.7e-128 464.2 641 59.8
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 3.7e-128 463.0 631 60.7
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 3.7e-128 463.0 454 60.6
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.4e-127 461.1 644 59.0
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.7e-125 454.1 353 70.8
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 6.5e-125 452.2 634 47.9
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.9e-124 450.7 455 58.9
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 2.0e-121 440.7 530 56.8
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 9.1e-119 431.8 521 58.3
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 2.0e-118 430.6 535 59.8
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.7e-112 411.0 526 57.8
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.1e-111 406.8 370 68.9
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.1e-111 406.4 370 68.6
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.1e-111 406.4 370 68.6
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-110 404.8 370 68.9
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.6e-110 403.7 319 80.3
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 5.9e-102 375.9 645 49.0
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.2e-96 357.5 326 62.0
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 1.0e-93 348.6 340 60.0
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 4.2e-92 343.2 351 55.8
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 4.7e-91 339.7 408 52.5
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 4.4e-89 333.2 333 57.1
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.8e-88 330.5 447 52.6
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.5e-76 290.8 407 46.2
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 4.0e-74 283.5 533 40.5
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 2.9e-72 277.3 405 44.9
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.2e-70 271.9 518 40.5
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 1.5e-68 265.0 273 70.3
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 1.2e-59 235.3 344 45.1
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.6e-57 227.6 313 46.3
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 5.8e-57 226.5 513 40.4
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 5.4e-47 193.4 134 78.4
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.0e-45 189.1 201 55.7
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 8.1e-43 179.5 103 84.5
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-38 164.9 334 45.2
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 2.2e-32 144.8 262 40.1
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 1.5e-28 132.1 153 52.3
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 9.6e-28 129.4 288 34.4
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 9.0e-26 122.9 152 86.2
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.9e-23 115.2 405 35.6
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 3.0e-21 107.8 257 29.2
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.1e-20 105.9 138 65.9
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 3.7e-19 100.9 61 83.6
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 4.8e-19 100.5 152 48.7
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 5.3e-18 97.1 175 71.4
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 3.4e-17 94.4 72 63.9
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 8.5e-16 89.7 53 79.2
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 1.7e-11 75.5 41 87.8
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.8e-11 74.7 151 40.4
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 1.1e-10 72.8 221 51.6
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 5.0e-08 63.9 43 74.4
Cpa.g.sc94.29 Carica papaya HOM05D004839 ORTHO05D006012 4.2e-07 60.8 38 76.3


User provided reference genes

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