Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G020300 Carya illinoinensis HOM05D003157 ORTHO05D012168 4.7e-132 474.6 244 100.0
CiPaw.11G020100 Carya illinoinensis HOM05D003157 ORTHO05D028662 5.4e-35 152.1 192 58.3
Haze_07584 Corylus avellana HOM05D003157 ORTHO05D004447 1.9e-24 117.1 227 41.0
QL10p006899 Quercus lobata HOM05D003157 ORTHO05D004447 2.1e-23 113.6 186 44.1
Potri.012G085700 Populus trichocarpa HOM05D003157 ORTHO05D004447 1.8e-22 110.5 184 42.9
Potri.015G084000 Populus trichocarpa HOM05D003157 ORTHO05D004447 5.2e-22 109.0 180 45.0
Thecc.03G025700 Theobroma cacao HOM05D003157 ORTHO05D004447 6.8e-22 108.6 171 43.3
Ca_14277_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 1.5e-21 107.5 179 40.8
Sabra15G0107200 Salix brachista HOM05D003157 ORTHO05D004447 2.0e-21 107.1 183 43.2
Sabra12G0061600 Salix brachista HOM05D003157 ORTHO05D004447 3.4e-21 106.3 184 42.9
CiPaw.11G019900 Carya illinoinensis HOM05D003157 ORTHO05D028662 4.4e-21 105.9 187 44.4
TWI14G1342 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 4.4e-21 105.9 183 40.4
Gohir.D11G043500 Gossypium hirsutum HOM05D003157 ORTHO05D004447 5.8e-21 105.5 183 41.0
Gorai.007G046900 Gossypium raimondii HOM05D003157 ORTHO05D004447 7.5e-21 105.1 183 41.0
CiPaw.11G019800 Carya illinoinensis HOM05D003157 ORTHO05D004447 9.8e-21 104.8 192 43.2
Cpa.g.sc159.27 Carica papaya HOM05D003157 ORTHO05D004447 1.3e-20 104.4 141 44.0
MSTRG.9691 Avicennia marina HOM05D003157 ORTHO05D004447 2.2e-20 103.6 173 38.2
TWI23G0818 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 2.9e-20 103.2 179 40.8
Glyma.17G084700 Glycine max HOM05D003157 ORTHO05D004447 4.9e-20 102.4 230 34.3
Gohir.A11G040300 Gossypium hirsutum HOM05D003157 ORTHO05D004447 4.9e-20 102.4 187 39.6
Cfa019214 Carpinus fangiana HOM05D003157 ORTHO05D004447 8.3e-20 101.7 203 38.9
Ciclev10024152m.g Citrus clementina HOM05D003157 ORTHO05D004447 8.3e-20 101.7 200 37.5
Gohir.D03G106700 Gossypium hirsutum HOM05D003157 ORTHO05D004447 8.3e-20 101.7 175 40.0
Gorai.003G115800 Gossypium raimondii HOM05D003157 ORTHO05D004447 8.3e-20 101.7 175 40.0
Rhsim12G0167900 Rhododendron simsii HOM05D003157 ORTHO05D004447 8.3e-20 101.7 180 40.6
vmacro16645 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 8.3e-20 101.7 180 40.6
Gohir.A03G056900 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.1e-19 101.3 171 42.1
Lsat_1_v5_gn_4_77240 Lactuca sativa HOM05D003157 ORTHO05D004447 1.1e-19 101.3 170 41.2
Manes.06G110100 Manihot esculenta HOM05D003157 ORTHO05D004447 1.1e-19 101.3 191 39.8
Lalb_Chr07g0182971 Lupinus albus HOM05D003157 ORTHO05D004447 1.4e-19 100.9 229 34.1
CANSAT80G2678 Cannabis sativa HOM05D003157 ORTHO05D004447 1.9e-19 100.5 183 39.9
Lalb_Chr13g0297581 Lupinus albus HOM05D003157 ORTHO05D004447 3.2e-19 99.8 229 33.6
Medtr4g104880 Medicago truncatula HOM05D003157 ORTHO05D004447 3.2e-19 99.8 195 36.4
MSTRG.11494 Avicennia marina HOM05D003157 ORTHO05D004447 4.1e-19 99.4 173 39.9
Prupe.5G165800 Prunus persica HOM05D003157 ORTHO05D004447 4.1e-19 99.4 184 40.2
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 5.4e-19 99.0 158 43.0
Psat4g060880 Pisum sativum HOM05D003157 ORTHO05D004447 5.4e-19 99.0 178 38.8
Phvul.003G205000 Phaseolus vulgaris HOM05D003157 ORTHO05D004447 9.2e-19 98.2 206 35.9
Manes.14G060700 Manihot esculenta HOM05D003157 ORTHO05D004447 1.6e-18 97.4 186 41.9
VMungo1215G0567 Vigna mungo HOM05D003157 ORTHO05D004447 1.6e-18 97.4 226 33.2
PGR044G1972 Punica granatum HOM05D003157 ORTHO05D004447 2.1e-18 97.1 185 38.9
Oeu040857.2 Olea europaea HOM05D003157 ORTHO05D004447 2.7e-18 96.7 175 38.3
Migut.D01995 Erythranthe guttata HOM05D003157 ORTHO05D004447 6.0e-18 95.5 175 37.1
Glyma.05G041600 Glycine max HOM05D003157 ORTHO05D004447 1.3e-17 94.4 103 50.5
MD06G1165900 Malus domestica HOM05D003157 ORTHO05D004447 1.3e-17 94.4 180 41.1
TAR629G0508 Trochodendron aralioides HOM05D003157 ORTHO05D004447 1.7e-17 94.0 171 42.7
ClCG01G013500 Citrullus lanatus HOM05D003157 ORTHO05D004447 2.3e-17 93.6 190 35.8
Lj4g0014353 Lotus japonicus HOM05D003157 ORTHO05D004447 2.3e-17 93.6 87 57.5
Hund02785 Selenicereus undatus HOM05D003157 ORTHO05D004447 2.3e-17 93.6 173 43.9
TPR.G37494 Trifolium pratense HOM05D003157 ORTHO05D004447 2.3e-17 93.6 195 35.9
AUR62028729 Chenopodium quinoa HOM05D003157 ORTHO05D004447 3.0e-17 93.2 169 41.4
TAR371G0612 Trochodendron aralioides HOM05D003157 ORTHO05D004447 3.0e-17 93.2 180 40.0
FvH4_5g06270 Fragaria vesca HOM05D003157 ORTHO05D004447 5.1e-17 92.4 190 36.8
HanXRQChr16g0504701 Helianthus annuus HOM05D003157 ORTHO05D004447 5.1e-17 92.4 164 37.8
HanXRQChr10g0296081 Helianthus annuus HOM05D003157 ORTHO05D004447 6.6e-17 92.0 170 40.6
SalBow6G1229 Salvia bowleyana HOM05D003157 ORTHO05D004447 6.6e-17 92.0 175 37.1
ClCG03G002990 Citrullus lanatus HOM05D003157 ORTHO05D004447 8.6e-17 91.7 184 36.4
arahy.Tifrunner.gnm1.ann1.UDW2C6 Arachis hypogaea HOM05D003157 ORTHO05D004447 1.1e-16 91.3 96 49.0
CSS0041144 Camellia sinensis var. sinensis HOM05D003157 ORTHO05D004447 1.5e-16 90.9 198 36.9
FAN13G0746 Fragaria x ananassa HOM05D003157 ORTHO05D004447 1.5e-16 90.9 190 36.3
Nitab4.5_0001793g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.9e-16 90.5 179 37.4
arahy.Tifrunner.gnm1.ann1.RZMV9E Arachis hypogaea HOM05D003157 ORTHO05D004447 2.5e-16 90.1 96 49.0
DCAR_026172 Daucus carota HOM05D003157 ORTHO05D004447 2.5e-16 90.1 171 35.7
Cc04_g11550 Coffea canephora HOM05D003157 ORTHO05D004447 3.3e-16 89.7 173 37.0
FAN04G1965 Fragaria x ananassa HOM05D003157 ORTHO05D004447 3.3e-16 89.7 190 36.3
Dinv20600 Davidia involucrata HOM05D003157 ORTHO05D004447 4.3e-16 89.4 190 40.0
A08p21390 Brassica napus HOM05D003157 ORTHO05D004447 5.6e-16 89.0 103 48.5
Peaxi162Scf00089g01334 Petunia axillaris HOM05D003157 ORTHO05D004447 5.6e-16 89.0 191 35.6
Eucgr.K02800 Eucalyptus grandis HOM05D003157 ORTHO05D004447 9.5e-16 88.2 173 38.2
Sopen06g028060 Solanum pennellii HOM05D003157 ORTHO05D004447 9.5e-16 88.2 115 44.3
BolC1t01929H Brassica oleracea HOM05D003157 ORTHO05D004447 1.2e-15 87.8 118 44.9
BraA08t34089Z Brassica rapa HOM05D003157 ORTHO05D004447 1.2e-15 87.8 103 48.5
Nitab4.5_0010452g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.2e-15 87.8 169 37.3
MELO3C002297.2 Cucumis melo HOM05D003157 ORTHO05D004447 2.1e-15 87.0 183 33.3
CsaV3_1G008830 Cucumis sativus L. HOM05D003157 ORTHO05D004447 2.1e-15 87.0 183 34.4
ECA232G3241 Erigeron canadensis HOM05D003157 ORTHO05D004447 2.1e-15 87.0 168 37.5
MD14G1171800 Malus domestica HOM05D003157 ORTHO05D004447 2.1e-15 87.0 184 35.3
C01p20020 Brassica napus HOM05D003157 ORTHO05D004447 2.8e-15 86.7 118 44.9
AUR62008147 Chenopodium quinoa HOM05D003157 ORTHO05D004447 2.8e-15 86.7 170 40.6
BcaC09g50840 Brassica carinata HOM05D003157 ORTHO05D004447 3.6e-15 86.3 118 44.9
CiPaw.11G020500 Carya illinoinensis HOM05D003157 ORTHO05D028662 4.7e-15 85.9 185 38.4
Oeu020884.3 Olea europaea HOM05D003157 ORTHO05D004447 4.7e-15 85.9 171 36.8
RcHm_v2.0_Chr7g0192591 Rosa chinensis HOM05D003157 ORTHO05D004447 4.7e-15 85.9 190 34.2
Solyc06g071770.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 8.1e-15 85.1 172 36.6
PGSC0003DMG400027073 Solanum tuberosum HOM05D003157 ORTHO05D004447 8.1e-15 85.1 172 35.5
Sp7g22680 Schrenkiella parvula HOM05D003157 ORTHO05D004447 1.4e-14 84.3 197 36.5
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 1.8e-14 84.0 99 49.5
CARHR232070 Cardamine hirsuta HOM05D003157 ORTHO05D004447 1.8e-14 84.0 125 43.2
FAN08G1011 Fragaria x ananassa HOM05D003157 ORTHO05D004447 2.3e-14 83.6 189 35.4
Aa31LG4G9790 Aethionema arabicum HOM05D003157 ORTHO05D004447 3.1e-14 83.2 171 33.9
Sed0005003 Sechium edule HOM05D003157 ORTHO05D004447 4.0e-14 82.8 166 36.1
Aqoxy3G01217 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 5.2e-14 82.4 125 45.6
BcaB03g12442 Brassica carinata HOM05D003157 ORTHO05D004447 5.2e-14 82.4 99 50.5
A01p16030 Brassica napus HOM05D003157 ORTHO05D004447 5.2e-14 82.4 118 44.1
Os02g0593700 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 5.2e-14 82.4 158 34.2
SGA_v2.0_scaffold7G04161 Striga asiatica HOM05D003157 ORTHO05D004447 5.2e-14 82.4 96 47.9
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 6.8e-14 82.0 171 36.3
BolC7t45866H Brassica oleracea HOM05D003157 ORTHO05D004447 1.2e-13 81.3 98 49.0
SHI17273 Sapria himalayana HOM05D003157 ORTHO05D004447 1.2e-13 81.3 116 37.9
SEGI_11452 Sequoiadendron giganteum HOM05D003157 ORTHO05D004447 1.2e-13 81.3 245 27.8
THA.LOC104809775 Tarenaya hassleriana HOM05D003157 ORTHO05D004447 1.2e-13 81.3 101 43.6
Thhalv10024557m.g Eutrema salsugineum HOM05D003157 ORTHO05D004447 1.5e-13 80.9 119 42.9
SGA_v2.0_scaffold114G31812 Striga asiatica HOM05D003157 ORTHO05D004447 1.5e-13 80.9 89 46.1
TPR.G37470 Trifolium pratense HOM05D003157 ORTHO05D004447 1.5e-13 80.9 81 46.9
Lalb_Chr12g0201891 Lupinus albus HOM05D003157 ORTHO05D004447 2.0e-13 80.5 94 46.8
Prupe.5G165900 Prunus persica HOM05D003157 ORTHO05D012168 2.0e-13 80.5 94 52.1
Actinidia08960 Actinidia chinensis HOM05D003157 ORTHO05D004447 2.6e-13 80.1 192 33.9
BcaC07g38161 Brassica carinata HOM05D003157 ORTHO05D004447 2.6e-13 80.1 165 36.4
BolC8t48585H Brassica oleracea HOM05D003157 ORTHO05D004447 2.6e-13 80.1 172 36.0
Lj5A130T68 Lonicera japonica HOM05D003157 ORTHO05D004447 2.6e-13 80.1 180 34.4
PGSC0003DMG400018122 Solanum tuberosum HOM05D003157 ORTHO05D004447 2.6e-13 80.1 182 33.5
DCAR_016024 Daucus carota HOM05D003157 ORTHO05D004447 3.4e-13 79.7 177 32.2
Peaxi162Scf00763g00430 Petunia axillaris HOM05D003157 ORTHO05D004447 3.4e-13 79.7 145 39.3
GSVIVG01007647001 Vitis vinifera HOM05D003157 ORTHO05D004447 3.4e-13 79.7 189 36.0
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 4.4e-13 79.3 102 45.1
BraA01t01537Z Brassica rapa HOM05D003157 ORTHO05D004447 4.4e-13 79.3 118 43.2
CAN.G993.20 Capsicum annuum HOM05D003157 ORTHO05D004447 4.4e-13 79.3 185 33.5
Medtr4g104900 Medicago truncatula HOM05D003157 ORTHO05D012168 5.8e-13 79.0 81 49.4
Rhsim08G0177500 Rhododendron simsii HOM05D003157 ORTHO05D004447 5.8e-13 79.0 190 33.7
Ah.11g051160 Amaranthus hybridus HOM05D003157 ORTHO05D004447 7.5e-13 78.6 175 32.0
CAN.G338.32 Capsicum annuum HOM05D003157 ORTHO05D004447 7.5e-13 78.6 167 35.3
vmacro19300 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 7.5e-13 78.6 166 34.3
Zm00001eb079700 Zea mays HOM05D003157 ORTHO05D004447 9.9e-13 78.2 190 30.5
Sc12g0005010 Simmondsia chinensis HOM05D003157 ORTHO05D004447 1.7e-12 77.4 187 32.1
EL10Ac5g10658 Beta vulgaris HOM05D003157 ORTHO05D004447 2.2e-12 77.0 170 40.6
A03p55470 Brassica napus HOM05D003157 ORTHO05D004447 2.2e-12 77.0 102 47.1
BraA03t14620Z Brassica rapa HOM05D003157 ORTHO05D004447 2.2e-12 77.0 102 47.1
FAN18G2672 Fragaria x ananassa HOM05D003157 ORTHO05D004447 2.2e-12 77.0 161 36.6
Os04g0476800 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 2.2e-12 77.0 169 34.9
AT4G24690 Arabidopsis thaliana HOM05D003157 ORTHO05D004447 3.7e-12 76.3 98 46.9
CDE02G1794 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 3.7e-12 76.3 210 31.0
Lsat_1_v5_gn_1_27780 Lactuca sativa HOM05D003157 ORTHO05D004447 3.7e-12 76.3 83 50.6
Sopen03g031330 Solanum pennellii HOM05D003157 ORTHO05D004447 3.7e-12 76.3 167 35.3
Solyc03g112230.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 4.9e-12 75.9 167 35.3
PSO754G0123 Papaver somniferum HOM05D003157 ORTHO05D004447 6.4e-12 75.5 179 34.6
Ca_03503_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 8.3e-12 75.1 72 56.9
unitig_37.g12746 Utricularia gibba HOM05D003157 ORTHO05D004447 8.3e-12 75.1 168 35.7
Migut.O00156 Erythranthe guttata HOM05D003157 ORTHO05D004447 1.1e-11 74.7 86 47.7
Nitab4.5_0008713g0020 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.1e-11 74.7 117 41.0
Lsat_1_v5_gn_8_1421 Lactuca sativa HOM05D003157 ORTHO05D012168 1.4e-11 74.3 72 54.2
Medtr4g104890 Medicago truncatula HOM05D003157 ORTHO05D012168 1.4e-11 74.3 85 47.1
RcHm_v2.0_Chr7g0192771 Rosa chinensis HOM05D003157 ORTHO05D012168 1.4e-11 74.3 98 43.9
COL.COLO4_24272 Corchorus olitorius HOM05D003157 ORTHO05D004447 1.9e-11 73.9 190 35.3
Actinidia08033 Actinidia chinensis HOM05D000048 ORTHO05D004447 4.1e-11 72.8 190 31.6
Actinidia24597 Actinidia chinensis HOM05D003157 ORTHO05D004447 4.1e-11 72.8 190 31.6
AL7G28510 Arabidopsis lyrata HOM05D003157 ORTHO05D004447 4.1e-11 72.8 168 36.3
Carub.0007s1637 Capsella rubella HOM05D003157 ORTHO05D004447 5.4e-11 72.4 121 39.7
ECA232G1718 Erigeron canadensis HOM05D003157 ORTHO05D012168 7.1e-11 72.0 128 37.5
Zm00001eb245950 Zea mays HOM05D003157 ORTHO05D004447 7.1e-11 72.0 192 30.7
Nitab4.5_0000003g0820 Nicotiana tabacum HOM05D003157 ORTHO05D004447 9.2e-11 71.6 117 40.2
TPR.G37497 Trifolium pratense HOM05D003157 ORTHO05D012168 9.2e-11 71.6 99 38.4
ECA232G3078 Erigeron canadensis HOM05D000048 ORTHO05D002613 1.6e-10 70.9 113 40.7
PSO111G0086 Papaver somniferum HOM05D003157 ORTHO05D004447 1.6e-10 70.9 105 41.9
CDE04G2303 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 2.1e-10 70.5 96 41.7
ATR0824G119 Amborella trichopoda HOM05D003157 ORTHO05D004447 4.6e-10 69.3 164 35.4
FvH4_5g06081 Fragaria vesca HOM05D003157 ORTHO05D012168 4.6e-10 69.3 75 49.3
FAN18G2478 Fragaria x ananassa HOM05D003157 ORTHO05D012168 6.0e-10 68.9 75 49.3
SEGI_31497 Sequoiadendron giganteum HOM05D003157 ORTHO05D012168 6.0e-10 68.9 86 41.9
FAN08G3352 Fragaria x ananassa HOM05D003157 ORTHO05D012168 1.0e-09 68.2 67 52.2
MBI18_g17021_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-09 68.2 142 41.5
Psat4g060960 Pisum sativum HOM05D003157 ORTHO05D012168 1.3e-09 67.8 81 45.7
HPP92_024706 Vanilla planifolia HOM05D003157 ORTHO05D004447 2.3e-09 67.0 172 31.4
Medtr4g104940 Medicago truncatula HOM05D003157 ORTHO05D012168 3.0e-09 66.6 85 42.4
Sed0026079 Sechium edule HOM05D003157 ORTHO05D004447 3.9e-09 66.2 109 37.6
FAN04G1049 Fragaria x ananassa HOM05D003157 ORTHO05D012168 5.1e-09 65.9 75 48.0
Medtr4g104990 Medicago truncatula HOM05D003157 ORTHO05D012168 5.1e-09 65.9 83 42.2
FAN13G2541 Fragaria x ananassa HOM05D003157 ORTHO05D012168 6.6e-09 65.5 65 52.3
Migut.O00157 Erythranthe guttata HOM05D003157 ORTHO05D004447 1.5e-08 64.3 97 39.2
HPP92_006279 Vanilla planifolia HOM05D003157 ORTHO05D004447 1.5e-08 64.3 127 36.2
Aqoxy3G03011 Aquilegia oxysepala HOM05D003157 ORTHO05D012168 2.5e-08 63.5 95 43.2
Medtr4g104980 Medicago truncatula HOM05D003157 ORTHO05D012168 2.5e-08 63.5 80 42.5
Nn3g16701 Nelumbo nucifera HOM05D003157 ORTHO05D004447 2.5e-08 63.5 185 30.8
MD06G1166000 Malus domestica HOM05D003157 ORTHO05D012168 9.5e-08 61.6 83 43.4
Lj9A442T64 Lonicera japonica HOM05D003157 ORTHO05D004447 2.1e-07 60.5 164 32.9
Medtr4g104950 Medicago truncatula HOM05D003157 ORTHO05D012168 2.1e-07 60.5 57 52.6
MBI19_g29861_MAGBIO Magnolia biondii HOM05D003157 ORTHO05D004447 2.8e-07 60.1 131 38.2
Medtr4g104960 Medicago truncatula HOM05D003157 ORTHO05D012168 2.8e-07 60.1 79 39.2
DCAR_021588 Daucus carota HOM05D003157 ORTHO05D004447 3.6e-07 59.7 73 49.3
DCAR_016453 Daucus carota HOM05D003157 ORTHO05D035004 1.1e-06 58.2 71 39.4
DCAR_016452 Daucus carota HOM05D000001 ORTHO05D035004 1.4e-06 57.8 98 31.6
Zm00001eb127620 Zea mays HOM05D003157 ORTHO05D037866 1.4e-06 57.8 63 50.8
Zm00001eb386700 Zea mays HOM05D003157 ORTHO05D037866 2.4e-06 57.0 63 50.8
Dinv15230 Davidia involucrata HOM05D003157 ORTHO05D004447 5.2e-06 55.8 64 48.4


User provided reference genes

Program Settings