Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 2.5e-165 585.9 422 100.0
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 1.7e-100 370.5 428 57.0
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 4.8e-100 369.0 426 67.1
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 7.7e-98 361.7 431 60.3
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.9e-96 357.1 422 59.2
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 2.5e-96 356.7 423 54.6
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.2e-96 355.9 430 65.8
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.2e-96 355.9 430 65.8
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 6.1e-95 352.1 429 58.3
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 8.0e-95 351.7 452 53.1
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.5e-93 347.4 451 63.6
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 2.6e-93 346.7 456 59.9
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 7.5e-93 345.1 469 63.8
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 4.8e-92 342.4 427 56.0
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 9.1e-91 338.2 468 62.2
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.0e-89 334.7 435 57.2
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.7e-89 334.0 431 55.9
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.3e-89 333.6 431 53.8
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 2.5e-88 330.1 439 58.8
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 4.7e-87 325.9 502 48.2
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 6.1e-87 325.5 486 49.2
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 1.4e-86 324.3 486 52.1
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 5.2e-86 322.4 451 59.9
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 6.8e-86 322.0 499 48.5
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 8.9e-86 321.6 452 55.5
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.5e-85 320.9 444 54.1
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 1.5e-85 320.9 494 45.5
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.4e-85 319.7 430 56.3
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 3.4e-85 319.7 433 53.6
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 5.7e-85 318.9 423 56.5
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 9.8e-85 318.2 425 49.9
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.8e-84 316.6 422 60.0
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 3.7e-84 316.2 432 58.8
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 4.9e-84 315.8 468 57.3
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 6.3e-84 315.5 518 54.2
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 3.1e-83 313.2 424 51.2
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 5.4e-83 312.4 422 55.2
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 5.4e-83 312.4 448 56.2
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.2e-82 311.2 575 52.9
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.7e-81 307.4 535 56.8
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 3.8e-81 306.2 422 58.1
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 6.6e-81 305.4 597 53.1
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 8.6e-81 305.1 547 51.9
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.1e-80 304.7 509 47.0
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.5e-80 304.3 426 54.2
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.9e-80 303.9 497 58.8
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 1.9e-80 303.9 437 53.1
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 3.3e-80 303.1 436 52.8
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 5.6e-80 302.4 433 52.2
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 7.3e-80 302.0 431 51.3
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 9.5e-80 301.6 422 56.9
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 4.7e-79 299.3 431 59.9
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 6.1e-79 298.9 460 54.6
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 8.0e-79 298.5 508 53.5
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.0e-78 298.1 480 55.8
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.0e-78 298.1 480 55.8
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 6.8e-78 295.4 460 46.5
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 8.9e-78 295.0 454 55.1
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.4e-77 293.1 443 57.8
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 7.5e-77 292.0 423 54.6
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.7e-76 290.8 539 49.4
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 2.2e-76 290.4 552 43.8
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 3.7e-76 289.7 422 54.3
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 3.2e-75 286.6 432 60.9
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 4.1e-75 286.2 436 50.7
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 1.3e-73 281.2 573 39.6
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 3.9e-73 279.6 422 51.9
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.1e-72 278.1 534 54.1
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.9e-72 277.3 456 57.0
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 4.3e-72 276.2 562 48.4
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 4.3e-72 276.2 445 54.4
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 7.3e-72 275.4 445 56.0
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.6e-71 274.2 445 55.7
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 8.0e-71 271.9 515 45.6
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 8.0e-71 271.9 457 56.7
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 5.2e-70 269.2 466 56.2
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 6.8e-70 268.9 457 55.8
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 4.4e-69 266.2 444 51.1
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 4.4e-69 266.2 444 51.4
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 9.8e-69 265.0 437 54.7
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 2.4e-67 260.4 476 52.7
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.6e-66 257.7 627 44.8
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.6e-66 257.7 627 44.8
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.7e-66 256.9 606 46.0
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.6e-66 256.1 581 47.0
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.0e-66 255.8 626 45.4
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.3e-65 254.6 468 56.2
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 2.5e-64 250.4 178 76.4
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 4.3e-64 249.6 171 76.6
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 3.6e-63 246.5 431 59.2
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 8.1e-63 245.4 511 50.7
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 1.8e-62 244.2 525 47.2
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 1.8e-62 244.2 535 46.5
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 6.8e-62 242.3 497 52.1
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 7.5e-61 238.8 529 52.2
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.7e-60 236.5 239 60.3
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 3.5e-58 229.9 475 49.7
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.7e-57 227.6 546 44.9
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 2.3e-57 227.3 517 47.4
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 5.1e-57 226.1 449 46.8
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 1.5e-53 214.5 630 36.7
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 7.6e-53 212.2 172 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 3.2e-51 206.8 175 67.4
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-48 198.4 421 48.9
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 2.9e-44 183.7 174 63.8
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 3.6e-39 166.8 212 56.6
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.2e-37 161.8 512 45.9
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 5.8e-37 159.5 354 47.7
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 7.6e-37 159.1 173 55.5
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 2.9e-36 157.1 180 53.9
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.9e-36 156.4 94 87.2
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 8.4e-36 155.6 105 83.8
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 6.0e-34 149.4 162 54.9
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.3e-33 148.3 94 81.9
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 6.7e-33 146.0 82 92.7
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.1e-31 141.0 396 35.6
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.1e-30 138.7 151 55.0
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 7.6e-29 132.5 321 49.5
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 2.9e-28 130.6 133 59.4
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 2.5e-27 127.5 104 66.3
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 8.2e-23 112.5 106 59.4
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 5.3e-22 109.8 141 53.9
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 1.7e-20 104.8 178 36.5
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.5e-19 100.9 395 43.5
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.2e-19 100.1 63 81.0
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.6e-18 98.2 154 45.5
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 1.1e-16 92.0 53 84.9
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 7.4e-16 89.4 178 36.0
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 7.4e-16 89.4 64 73.4
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.3e-12 78.6 68 66.2
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 2.1e-10 71.2 154 32.5
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.1e-09 66.6 95 41.1
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 2.0e-08 64.7 375 26.1
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 2.8e-07 60.8 62 66.1
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 8.2e-07 59.3 177 26.0
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.1e-06 57.4 62 54.8
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.1e-06 57.4 62 54.8
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.3e-06 56.6 117 34.2


User provided reference genes

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