Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 5.3e-306 1053.5 521 100.0
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 6.2e-214 747.7 542 69.9
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 3.0e-200 702.2 547 66.0
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 6.2e-198 694.5 546 66.1
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 6.7e-176 621.3 546 59.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 4.3e-175 618.6 531 58.8
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 7.1e-170 601.3 533 56.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.5e-169 599.0 534 57.1
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 7.9e-169 597.8 539 58.3
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.1e-167 594.0 542 57.2
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.3e-167 592.4 534 56.6
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.3e-167 592.4 533 56.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 4.8e-166 588.6 537 55.7
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 8.2e-166 587.8 522 57.9
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 8.2e-166 587.8 530 55.8
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.8e-165 586.6 533 56.1
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.4e-165 586.3 532 56.4
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 5.3e-165 585.1 532 56.4
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 9.0e-165 584.3 533 56.1
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 9.0e-165 584.3 530 55.7
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.0e-163 580.9 539 56.8
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 3.8e-163 578.9 535 54.8
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 2.1e-161 573.2 538 55.8
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.1e-161 573.2 547 55.6
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 7.9e-161 571.2 531 55.0
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 7.9e-161 571.2 538 54.8
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.4e-160 570.5 542 55.7
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 3.9e-160 568.9 535 56.3
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 6.7e-160 568.2 536 55.6
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 6.7e-160 568.2 546 55.9
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 2.8e-158 562.8 533 53.1
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.4e-157 559.7 536 54.7
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 5.9e-156 555.1 535 53.5
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 7.7e-156 554.7 542 53.7
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 2.2e-155 553.1 531 52.5
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.2e-155 553.1 534 53.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.9e-155 552.7 535 54.0
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.1e-154 550.8 535 54.0
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.2e-154 549.3 540 53.5
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 9.4e-154 547.7 460 60.2
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 2.3e-152 543.1 536 51.9
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.3e-151 539.3 533 54.2
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.4e-151 538.9 529 53.5
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-150 537.3 529 53.3
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 3.7e-150 535.8 535 53.1
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.1e-149 534.3 541 52.1
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.3e-149 531.9 531 52.0
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 5.3e-149 531.9 533 51.6
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 7.0e-149 531.6 542 50.9
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.2e-148 530.8 531 52.2
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.7e-147 526.9 534 52.1
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 2.2e-147 526.6 538 50.0
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.2e-147 526.6 533 51.6
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.9e-147 526.2 538 50.4
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.5e-146 523.9 532 50.0
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.5e-146 523.1 537 51.4
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 6.1e-145 518.5 452 58.0
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 3.9e-144 515.8 530 51.9
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 8.8e-144 514.6 533 51.0
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.7e-142 510.4 530 51.1
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.8e-142 508.8 529 49.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.1e-141 507.7 538 51.1
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.6e-140 503.1 545 49.4
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 4.5e-140 502.3 536 49.6
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 5.2e-136 488.8 535 48.8
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 3.4e-135 486.1 535 47.1
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.6e-132 477.2 547 46.1
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.5e-132 476.1 543 47.9
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 3.8e-131 472.6 516 51.2
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 6.5e-131 471.9 559 45.6
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.1e-130 471.1 542 47.8
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.5e-130 470.7 546 45.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.0e-128 464.5 541 44.7
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 6.8e-128 461.8 534 46.4
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.2e-127 461.1 538 46.8
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.1e-125 454.5 538 47.0
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.4e-125 454.1 558 46.4
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.8e-125 453.8 557 46.5
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.2e-124 451.1 559 43.5
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.3e-123 446.8 532 46.1
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 5.0e-123 445.7 545 45.3
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 5.0e-123 445.7 527 45.7
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 8.6e-123 444.9 578 45.3
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 5.5e-122 442.2 527 45.5
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.2e-121 441.0 509 47.3
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.6e-121 440.7 531 45.8
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 2.3e-120 436.8 550 45.5
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.3e-118 431.0 505 46.3
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.8e-117 427.2 528 44.9
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.4e-117 426.8 497 46.7
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 4.1e-117 426.0 542 44.1
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 5.9e-116 422.2 535 43.0
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.4e-112 411.0 548 42.0
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 2.3e-112 410.2 530 43.2
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.3e-112 410.2 426 51.4
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 7.5e-111 405.2 530 43.0
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 7.5e-111 405.2 530 43.0
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 7.5e-111 405.2 530 43.0
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 6.4e-110 402.1 530 42.1
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.1e-104 384.8 421 48.2
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-104 384.4 531 40.9
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.8e-92 342.0 331 53.8
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.9e-91 339.7 501 40.3
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 9.9e-87 325.1 454 44.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 8.4e-86 322.0 516 40.1
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.4e-85 319.3 511 38.6
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 6.6e-83 312.4 575 35.0
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-77 295.0 288 54.9
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.4e-77 293.9 302 49.7
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.2e-77 293.5 623 32.7
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 3.5e-76 290.0 413 42.4
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 4.9e-70 269.6 283 48.4
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.4e-64 251.5 331 43.8
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.9e-64 249.2 229 54.6
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 4.5e-63 246.5 571 32.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 2.1e-60 237.7 564 30.9
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 3.3e-50 203.8 565 29.0
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.4e-45 188.3 309 38.2
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 3.2e-45 187.2 388 32.5
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 1.7e-41 174.9 562 27.0
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 3.8e-38 163.7 199 40.7
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 5.7e-34 149.8 206 42.2
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 7.7e-31 139.4 210 33.3
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.4e-27 128.6 124 51.6
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 2.8e-25 120.9 121 48.8
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.3e-22 112.1 240 33.3
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 2.9e-22 110.9 299 29.8
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.5e-22 109.4 189 37.0
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-21 109.0 189 36.5
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 5.2e-19 100.1 101 49.5
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.0e-18 98.2 127 40.2
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 9.8e-18 95.9 189 35.4
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 8.5e-14 82.8 103 40.8
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.5e-14 82.8 112 41.1
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.2e-12 79.0 69 58.0
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 2.7e-12 77.8 159 34.6
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 2.6e-10 71.2 58 51.7
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-10 70.1 101 38.6
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-07 62.4 53 66.0
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-07 62.0 158 32.3
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.3e-06 58.2 97 33.0
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.8e-06 57.4 60 53.3
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 3.8e-06 57.4 274 21.2


User provided reference genes

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