Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1439.9 711 100.0
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1259.2 691 88.1
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1210.7 713 82.3
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1189.1 712 80.9
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1184.1 714 80.5
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1184.1 707 81.9
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 0.0e+00 1182.2 791 76.5
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1181.4 712 80.6
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1178.7 712 80.1
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1177.9 712 79.4
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1174.5 706 80.9
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1169.1 714 79.8
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1168.3 712 79.8
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1167.5 714 80.0
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1165.6 711 80.2
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1162.5 711 78.8
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1159.8 712 78.9
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1159.1 712 78.9
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1156.0 707 79.8
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1148.7 707 79.5
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1148.7 702 79.3
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1146.0 712 77.8
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1144.0 707 79.6
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1142.9 707 79.6
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1137.9 711 77.9
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1132.1 704 78.0
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1130.9 699 79.5
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1126.7 706 77.1
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1126.7 705 77.3
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1125.5 707 77.5
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1119.0 700 77.0
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1116.3 708 76.7
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1112.1 704 76.1
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1105.9 712 75.6
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1105.9 713 76.4
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1102.0 702 74.8
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1101.7 700 76.4
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 712 74.7
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1098.6 699 76.8
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 712 76.0
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1096.3 703 76.5
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1096.3 713 75.0
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1092.0 708 75.8
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1090.9 703 75.7
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1090.5 706 74.6
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1090.1 702 74.1
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1089.7 710 73.7
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1089.3 702 73.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 0.0e+00 1088.9 706 75.2
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 0.0e+00 1088.6 707 74.8
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1087.8 703 75.5
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1086.6 712 73.7
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1081.6 695 74.0
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1078.5 740 72.3
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1076.6 707 75.0
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 9.7e-312 1072.8 714 72.7
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.7e-310 1068.9 707 74.4
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 3.7e-310 1067.8 713 73.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 3.7e-310 1067.8 707 73.1
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 8.2e-310 1066.6 725 73.7
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 6.9e-309 1063.5 729 72.6
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 9.1e-309 1063.1 701 74.0
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 706 73.2
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.2e-307 1058.5 703 73.1
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.0e-300 1035.4 724 70.2
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 708 70.2
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.9e-298 1028.9 706 71.2
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 4.2e-298 1027.7 705 71.6
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 5.5e-298 1027.3 705 71.6
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 7.2e-298 1026.9 705 71.5
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 2.1e-297 1025.4 700 71.1
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 2.1e-297 1025.4 712 70.4
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.0e-296 1023.1 701 71.0
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 1.0e-296 1023.1 712 70.1
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.4e-296 1022.7 705 70.6
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.1e-295 1019.6 706 71.5
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.1e-295 1019.6 657 74.1
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.7e-294 1014.6 704 70.0
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.8e-293 1012.3 707 70.4
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 3.5e-292 1008.1 706 71.2
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 1.0e-291 1006.5 704 69.7
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.3e-288 995.3 702 69.9
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 2.6e-287 991.9 780 64.0
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 2.4e-285 985.3 698 68.9
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.5e-282 975.3 703 70.6
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 8.0e-281 970.3 588 80.6
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 2.3e-280 968.8 761 64.4
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 5.4e-277 957.6 711 65.8
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.2e-276 956.4 712 65.9
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 1.2e-273 946.4 562 80.4
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 4.9e-270 934.5 599 75.6
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 8.3e-270 933.7 715 65.6
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 3.9e-267 924.9 674 67.5
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 5.4e-261 904.4 713 64.9
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.5e-258 896.3 713 61.7
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 8.0e-257 890.6 548 79.2
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 8.9e-248 860.5 705 62.3
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.2e-237 825.5 523 77.2
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 3.1e-216 755.7 693 54.4
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 9.0e-216 754.2 733 57.7
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 1.0e-211 740.7 692 53.8
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.2e-198 696.4 392 85.7
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 5.9e-191 671.8 697 50.1
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 9.1e-184 647.9 881 42.3
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.5e-183 646.0 450 69.6
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 8.0e-172 608.2 844 42.1
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 9.8e-170 601.3 675 47.3
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 2.7e-159 566.6 492 56.7
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 2.6e-146 523.5 759 42.4
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.0e-142 511.5 733 42.7
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 4.7e-132 476.1 811 38.3
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 5.8e-130 469.2 741 39.4
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.4e-128 463.8 721 38.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.4e-123 447.2 334 71.0
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 8.1e-116 422.2 361 59.6
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.6e-114 417.2 302 70.5
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.2e-79 302.0 270 57.8
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 8.2e-76 289.3 200 69.5
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 9.1e-67 259.2 196 65.3
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 9.1e-59 232.6 163 66.9
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 4.5e-58 230.3 132 83.3
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 2.0e-45 188.3 106 85.8
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 2.1e-39 168.3 102 80.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 5.7e-37 160.2 174 54.6
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.1e-32 146.0 100 73.0
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.6e-31 142.1 115 58.3
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.0e-30 139.4 96 66.7
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.6e-23 115.5 148 45.3
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 2.1e-23 115.2 61 86.9
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 6.0e-18 97.1 62 69.4
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 2.1e-15 88.6 59 69.5
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.3e-12 79.3 45 82.2
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 5.4e-11 73.9 45 71.1
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 5.4e-11 73.9 63 55.6
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 1.2e-07 62.8 48 56.2
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 6.9e-06 57.0 39 69.2


User provided reference genes

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