Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 0.0e+00 1145.6 659 100.0
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 7.6e-302 1040.0 660 89.2
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 3.0e-282 974.9 660 87.4
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 3.0e-282 974.9 660 87.4
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.4e-268 929.5 663 81.6
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.2e-262 909.8 662 81.4
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.9e-261 905.2 660 77.3
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 6.5e-261 904.0 664 80.1
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.6e-259 899.4 665 77.9
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.1e-259 899.0 660 77.1
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 3.3e-257 891.7 663 77.5
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 9.7e-257 890.2 664 78.8
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.7e-256 889.4 663 78.7
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.1e-255 886.7 664 78.8
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 5.3e-255 884.4 663 78.4
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 8.5e-253 877.1 661 75.9
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 7.2e-252 874.0 664 77.3
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.1e-251 872.5 661 75.5
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.1e-251 872.5 665 75.9
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 2.7e-251 872.1 660 74.1
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.3e-250 869.0 664 74.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 2.3e-250 869.0 663 76.8
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 5.2e-250 867.8 665 73.1
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.4e-249 864.8 661 75.9
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 7.5e-249 864.0 660 75.8
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.1e-247 860.1 660 73.2
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 3.1e-247 858.6 667 74.8
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.1e-247 858.2 662 79.2
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.7e-245 852.8 662 74.6
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.1e-243 845.9 665 73.5
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 2.1e-243 845.9 664 73.9
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 2.8e-243 845.5 663 74.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 8.0e-243 844.0 665 75.6
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.5e-241 839.7 666 73.1
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.5e-241 837.4 662 72.8
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 7.5e-241 837.4 661 74.0
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.0e-239 830.9 662 72.4
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-238 829.7 662 72.2
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.7e-238 828.9 663 70.9
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.9e-238 827.8 662 73.9
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 5.0e-237 824.7 662 71.9
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.5e-236 822.4 661 72.2
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.0e-234 817.0 661 72.9
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 8.9e-234 813.9 660 70.2
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.7e-232 809.7 639 72.9
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.5e-230 802.0 676 75.1
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 6.0e-230 801.2 663 73.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 5.6e-228 794.7 666 70.0
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 6.2e-227 791.2 672 67.0
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 4.4e-225 785.0 660 69.7
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.6e-222 775.0 662 66.3
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 3.9e-221 771.9 665 67.7
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 9.2e-215 750.7 661 67.5
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 9.2e-215 750.7 665 66.8
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.6e-214 750.0 658 66.4
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 7.8e-214 747.7 658 67.8
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 8.6e-213 744.2 659 64.9
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 7.3e-212 741.1 665 64.7
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 8.1e-211 737.6 661 65.8
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.4e-210 736.9 668 67.2
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 5.2e-210 734.9 667 65.4
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.0e-209 733.0 659 66.9
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.6e-209 732.6 661 64.8
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.6e-209 731.1 610 70.7
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.2e-208 729.6 661 65.7
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.8e-208 728.8 658 66.3
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 4.9e-208 728.4 665 64.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.9e-208 728.4 675 66.4
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.2e-207 725.7 675 66.4
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 7.1e-207 724.5 614 66.4
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 9.2e-207 724.2 669 63.7
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 3.5e-206 722.2 661 65.1
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 4.6e-206 721.8 662 67.8
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.1e-204 717.2 668 62.3
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.5e-204 716.1 663 62.0
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 3.3e-204 715.7 663 62.1
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.2e-203 713.8 659 62.5
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.6e-203 712.2 662 63.7
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.7e-203 711.8 663 61.7
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 2.4e-202 709.5 665 67.1
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-202 709.5 663 61.4
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.5e-201 706.8 665 63.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 2.6e-201 706.1 660 66.2
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 2.6e-201 706.1 662 65.1
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.4e-201 705.7 546 74.4
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.4e-201 705.7 546 74.4
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.8e-201 704.9 663 61.4
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 9.9e-201 704.1 662 67.1
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-200 703.7 670 62.8
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.3e-200 703.7 670 62.8
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 1.3e-200 703.7 661 65.4
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 1.7e-200 703.4 661 65.2
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.4e-199 699.5 668 62.1
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 2.4e-199 699.5 666 65.2
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 5.4e-199 698.4 668 65.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 5.4e-199 698.4 659 63.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.2e-198 697.2 683 62.2
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.2e-198 697.2 660 65.6
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-197 693.7 664 61.9
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.3e-197 693.7 661 63.7
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.8e-195 685.3 543 71.8
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.4e-194 683.7 661 65.5
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.6e-193 679.5 666 63.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.4e-193 679.1 667 62.1
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 4.5e-193 678.7 662 60.4
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 5.8e-193 678.3 667 64.6
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.2e-192 676.4 656 61.3
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.0e-190 668.3 662 58.8
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 6.0e-190 668.3 659 58.7
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.7e-189 664.8 663 62.9
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 6.9e-186 654.8 665 60.3
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 6.9e-186 654.8 661 62.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 5.8e-185 651.7 662 60.9
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 7.1e-183 644.8 663 63.8
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.3e-181 640.6 657 57.8
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.8e-181 640.2 569 66.1
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 3.9e-181 639.0 663 59.0
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 5.6e-180 635.2 673 55.4
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.7e-179 632.5 662 57.7
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.9e-178 628.2 669 55.9
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 7.6e-177 624.8 669 57.1
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 2.9e-176 622.9 665 55.8
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.9e-176 622.9 682 56.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 6.5e-176 621.7 666 59.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 6.5e-176 621.7 671 55.6
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-175 620.5 678 54.0
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.5e-175 619.8 662 55.3
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.2e-174 617.5 662 59.8
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.4e-172 608.2 670 57.5
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.8e-170 603.6 663 55.2
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.9e-167 593.6 664 56.9
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.2e-167 591.7 654 60.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.2e-163 580.1 658 54.7
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.2e-160 570.1 683 53.7
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 5.0e-160 568.9 685 53.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.6e-158 563.9 683 51.8
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 2.7e-158 563.1 665 50.5
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 3.3e-156 556.2 681 53.0
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.1e-154 549.7 667 52.9
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.3e-154 548.9 648 56.3
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.0e-152 544.7 676 54.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.2e-152 543.5 661 52.3
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 3.8e-152 542.7 627 53.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.0e-149 534.6 666 52.0
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 8.2e-147 525.0 663 52.2
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.2e-144 516.9 660 51.1
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 7.2e-143 511.9 546 56.8
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.0e-141 508.1 400 73.2
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.5e-135 487.6 405 76.8
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.8e-128 463.0 408 67.6
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.3e-125 453.8 675 50.2
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.0e-124 450.7 621 48.8
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 3.2e-122 443.4 673 45.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.6e-121 441.0 431 62.9
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 6.0e-113 412.5 663 44.9
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.1e-90 338.6 672 40.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.2e-89 335.1 543 43.5
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 4.3e-87 326.6 553 43.4
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.6e-86 324.7 311 58.8
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.6e-86 323.6 234 75.6
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 5.3e-77 293.1 654 39.9
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.1e-71 275.4 514 39.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 2.0e-60 238.0 637 33.8
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 6.3e-54 216.5 276 44.9
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.3e-38 165.6 224 50.4
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.5e-36 157.5 113 67.3
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.1e-29 136.0 77 85.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 2.9e-27 127.9 158 51.9
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-24 119.0 109 54.1
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 6.8e-24 116.7 87 67.8
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.4e-21 109.0 133 43.6
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 5.4e-21 107.1 126 56.3
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.3e-19 102.4 78 71.8
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-18 99.4 61 75.4
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.9e-18 98.6 74 66.2
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 7.5e-15 86.7 485 25.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 2.0e-12 78.6 60 65.0
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 7.3e-10 70.1 405 26.2
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 6.1e-09 67.0 78 52.6
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 1.0e-08 66.2 141 44.0
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 1.0e-08 66.2 83 78.3
Actinidia01898 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.7e-06 58.9 122 36.9


User provided reference genes

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