Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 4115.8 2194 100.0
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 3308.5 2198 82.8
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 3239.1 2201 81.2
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2757.2 2234 68.7
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2675.2 2222 67.5
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2667.5 2232 67.7
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2664.8 2222 66.8
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2620.9 2230 65.3
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2597.8 2232 65.1
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2594.7 2218 65.3
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2579.7 2225 64.8
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2568.5 2245 64.3
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2564.6 2227 65.3
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2549.2 2280 63.4
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2543.5 2220 65.6
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2543.1 2271 63.3
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2540.0 2238 65.7
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2533.8 2233 63.7
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2525.4 2216 64.8
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2516.9 2225 63.5
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2512.6 2290 62.5
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2504.2 2274 63.6
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2488.4 2225 63.5
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2486.1 2230 63.5
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2484.5 2218 63.4
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2471.0 2222 63.5
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2460.3 2218 63.0
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2456.4 2232 62.9
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2444.1 2223 62.7
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2442.2 2222 63.0
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2441.8 2221 62.3
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2399.4 2242 61.7
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2394.8 2328 60.5
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2384.4 2225 61.4
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2353.2 2225 61.1
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 2336.2 2229 60.7
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2334.7 2259 60.6
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2301.9 2220 59.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2273.8 2232 58.6
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2273.4 2228 59.0
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2270.7 2205 59.1
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2233.0 2043 62.3
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2223.4 2304 57.6
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2222.2 2043 61.5
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2221.8 2235 58.5
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2185.6 2302 57.3
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2174.1 2133 59.4
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2165.6 2235 58.1
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2162.5 2229 57.5
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2157.9 1720 69.0
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2119.7 2297 56.0
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 2106.3 1424 79.5
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2105.1 2273 56.5
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2090.1 2271 56.0
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 2079.3 2235 55.9
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 2066.2 2234 55.3
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 2051.6 2213 54.3
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 2049.2 2235 55.4
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 2041.2 2206 55.8
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 2039.6 2208 53.7
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2035.4 2216 54.4
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 2020.0 2228 53.3
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 2015.0 2235 54.2
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2006.9 2223 54.1
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1998.8 2251 53.6
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1996.9 2211 55.2
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1996.1 2205 52.8
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1992.6 2196 53.4
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1991.9 2196 53.5
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1989.9 2234 54.2
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1988.0 2207 53.3
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1983.0 1948 58.7
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1979.5 2212 52.9
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1974.5 2207 54.1
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1964.5 2217 52.8
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1959.9 2215 52.5
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1958.7 2204 53.0
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1958.0 2212 52.5
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1958.0 2142 55.2
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1943.7 2110 55.6
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1889.8 2171 54.3
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1861.3 1390 69.9
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1850.5 2185 52.5
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1828.5 2208 51.3
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1823.9 2062 53.9
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1823.1 2215 51.5
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1761.1 1393 67.8
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1757.7 1393 67.8
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1691.8 2356 47.3
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1524.2 2215 45.5
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1500.0 1469 60.4
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1473.0 2292 44.4
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1416.7 1252 61.3
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1286.6 2227 41.2
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1266.5 1361 56.2
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1263.8 1635 49.9
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 0.0e+00 1198.3 1269 57.2
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1188.7 1235 57.4
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1086.6 808 80.1
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1080.9 1388 51.4
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 1.4e-296 1024.2 819 69.0
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 8.2e-284 981.9 1119 48.9
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 9.4e-264 915.2 1319 46.2
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.9e-204 717.6 1703 31.6
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 4.2e-179 634.0 841 54.0
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.1e-179 633.3 983 44.3
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 3.5e-178 630.9 841 53.9
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.6e-173 614.8 950 48.4
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.1e-170 605.1 488 65.4
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.1e-166 592.8 1046 41.8
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.2e-138 499.6 1123 36.0
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 8.0e-138 496.9 2275 27.3
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.7e-135 489.2 428 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 2.8e-130 471.9 1443 28.5
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 5.9e-125 454.1 344 71.2
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.6e-122 446.0 650 44.5
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 2.7e-109 402.1 904 37.1
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 4.6e-93 348.2 450 56.2
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 1.1e-89 337.0 282 63.5
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 5.3e-89 334.7 215 79.5
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.9e-83 316.2 278 63.3
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 6.2e-82 311.2 1901 23.2
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.9e-81 307.8 390 47.2
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 9.3e-78 297.4 332 51.2
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 2.8e-74 285.8 465 49.5
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-71 275.8 331 48.9
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.3e-67 262.3 163 82.8
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 3.3e-59 235.7 463 46.0
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-57 230.7 153 77.1
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-55 222.6 233 56.7
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.5e-51 210.3 252 59.1
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.2e-50 206.5 331 42.6
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.1e-49 204.1 153 67.3
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 3.2e-46 192.6 176 60.8
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.2e-45 190.7 208 52.4
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.6e-40 172.9 112 78.6
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 2.6e-40 172.9 705 32.6
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-36 161.0 119 68.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.8e-34 152.1 541 29.8
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 9.1e-33 147.9 128 65.6
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.9e-31 142.9 342 33.9
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.6e-29 137.1 220 37.3
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.6e-21 110.5 107 65.4
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 3.6e-21 109.4 68 76.5
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 1.7e-18 100.5 96 59.4
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 4.5e-16 92.4 74 73.0
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.0e-15 89.0 71 71.8
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 9.5e-14 84.7 78 59.0
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 2.8e-13 83.2 195 34.4
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 6.1e-13 82.0 77 54.5
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 5.2e-12 79.0 78 55.1
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 8.9e-12 78.2 133 32.3
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 9.8e-11 74.7 118 39.8
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.7e-10 73.9 103 45.6
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.4e-10 72.0 417 29.7
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 4.1e-09 69.3 45 75.6
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.0e-09 68.6 286 33.2
SHI25001 Sapria himalayana HOM05D004426 ORTHO05D005417 2.0e-08 67.0 52 57.7
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 3.5e-08 66.2 97 39.2
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.8e-08 65.1 61 54.1
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 3.0e-07 63.2 59 62.7
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 6.6e-07 62.0 85 51.8
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.1e-06 61.2 41 65.9


User provided reference genes

Program Settings