Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.7e-145 519.2 253 100.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 3.2e-107 392.1 250 78.8
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.9e-99 366.3 249 72.7
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.1e-90 336.3 245 65.7
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.1e-88 330.5 248 66.5
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.9e-88 329.7 255 65.9
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 4.1e-86 322.0 249 64.3
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 5.0e-84 315.1 248 61.7
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 3.6e-82 308.9 250 63.2
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 6.1e-82 308.1 246 62.6
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.0e-81 307.4 247 61.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.4e-81 307.0 246 62.6
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 8.8e-81 304.3 244 62.7
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.1e-80 303.9 244 61.9
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.0e-80 303.1 245 60.8
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.3e-80 302.4 248 60.1
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.4e-80 302.0 244 61.9
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 4.4e-80 302.0 250 59.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.7e-80 300.8 252 62.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.7e-80 300.8 252 62.7
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.7e-80 300.8 252 62.7
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 9.7e-80 300.8 249 61.0
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 2.8e-79 299.3 251 62.5
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 4.8e-79 298.5 252 62.3
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 4.8e-79 298.5 258 59.3
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.1e-78 297.4 252 61.1
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.4e-78 297.0 244 59.4
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.4e-78 296.2 244 61.5
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.9e-77 291.6 251 61.8
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.0e-76 290.8 251 58.2
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-76 290.4 221 64.3
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.7e-76 290.0 244 58.6
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 5.0e-76 288.5 250 60.8
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 6.5e-76 288.1 249 59.0
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 3.2e-75 285.8 250 60.0
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 9.4e-75 284.3 249 57.0
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.0e-73 280.8 250 58.0
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 5.2e-73 278.5 250 56.4
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 8.8e-73 277.7 251 54.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.1e-72 277.3 245 58.4
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.0e-72 276.6 249 56.2
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.3e-72 275.8 245 55.5
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 4.4e-72 275.4 249 56.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 5.7e-72 275.0 249 57.8
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.1e-70 270.8 251 57.4
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.1e-70 270.8 250 56.0
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.4e-70 270.4 243 54.7
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.3e-70 268.5 224 62.5
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.0e-68 264.2 247 55.1
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.2e-68 263.1 245 57.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.8e-68 262.3 247 55.9
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 6.5e-68 261.5 249 55.8
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.5e-67 259.6 250 54.4
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 3.2e-67 259.2 246 55.3
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.2e-66 257.3 238 57.6
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 4.7e-66 255.4 257 50.6
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 6.1e-66 255.0 245 53.5
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 8.0e-66 254.6 252 54.0
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.3e-65 253.1 245 53.9
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 5.2e-65 251.9 259 53.3
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.7e-64 248.4 245 53.9
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 2.4e-62 243.0 157 78.3
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 4.1e-62 242.3 211 59.7
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 4.1e-62 242.3 220 56.4
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.5e-61 239.2 246 51.6
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 4.5e-61 238.8 244 52.0
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.0e-60 237.7 247 53.0
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.3e-60 237.3 247 49.8
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.7e-60 236.9 244 51.6
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.7e-60 236.9 244 51.2
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 8.5e-60 234.6 254 49.2
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.5e-59 233.0 248 48.4
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 5.5e-59 231.9 245 51.8
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.1e-58 229.9 248 50.8
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 4.7e-58 228.8 246 49.6
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.3e-57 226.5 253 49.8
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.3e-57 226.5 245 50.2
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 8.8e-57 224.6 248 50.8
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 2.6e-56 223.0 251 48.6
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.4e-56 222.6 245 49.8
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 7.5e-56 221.5 245 49.8
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.8e-55 219.5 244 46.3
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 8.3e-55 218.0 266 46.6
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.1e-54 217.6 245 46.5
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.4e-54 217.2 221 54.3
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.4e-54 215.3 244 44.3
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 7.7e-53 211.5 204 56.9
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 7.7e-53 211.5 241 45.2
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.0e-52 211.1 249 45.8
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 3.3e-51 206.1 244 46.7
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.8e-50 203.0 247 44.5
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.6e-48 196.4 246 44.3
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.4e-48 195.7 222 43.7
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 5.7e-48 195.3 229 49.3
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.7e-44 183.7 252 42.9
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.3e-44 183.3 250 43.2
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 2.3e-44 183.3 250 43.2
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.6e-43 178.7 211 43.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 8.0e-42 174.9 254 40.9
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.3e-36 157.5 117 63.2
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 5.0e-36 155.6 86 86.0
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 9.2e-30 134.8 150 47.3
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.2e-24 117.9 288 30.2
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 4.4e-24 115.9 85 63.5
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 4.9e-23 112.5 131 48.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.1e-22 109.4 83 61.4
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 9.2e-22 108.2 280 30.4
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 4.6e-21 105.9 86 60.5
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 4.0e-17 92.8 175 34.3
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 4.0e-17 92.8 59 74.6
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.6e-16 90.1 86 47.7
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-10 70.9 199 28.6
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.3e-07 61.2 54 51.9


User provided reference genes

Program Settings