Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 0.0e+00 1135.2 581 100.0
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 3.6e-295 1017.7 566 90.6
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 6.7e-294 1013.4 568 90.5
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.4e-291 1005.0 592 87.3
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 2.2e-284 981.9 569 87.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 3.7e-284 981.1 569 87.7
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.2e-279 966.1 570 84.6
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.1e-279 965.3 569 84.7
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.7e-279 964.9 567 85.5
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 6.1e-279 963.8 568 85.4
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 6.1e-279 963.8 581 83.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.0e-278 961.4 573 84.5
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.2e-277 959.5 569 85.2
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 4.4e-277 957.6 569 85.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.4e-275 952.6 567 84.1
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.9e-273 944.9 567 83.6
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 5.0e-273 944.1 568 83.5
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.2e-271 939.5 567 83.2
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.7e-271 937.6 569 83.3
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.3e-270 935.3 569 82.4
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.0e-270 934.9 568 82.7
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.0e-270 934.5 566 82.5
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.0e-270 934.5 569 82.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 6.8e-270 933.7 568 82.7
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 8.8e-270 933.3 567 82.5
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 8.8e-270 933.3 568 82.9
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 4.4e-269 931.0 565 82.7
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 7.5e-269 930.2 569 82.8
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.7e-268 929.1 589 81.7
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.2e-268 928.7 567 82.2
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.2e-268 928.7 569 82.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.8e-268 928.3 584 80.8
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.2e-267 923.3 569 82.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 9.2e-267 923.3 567 81.7
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 3.5e-266 921.4 569 82.4
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.0e-265 919.8 569 82.1
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.7e-265 919.1 567 81.7
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.9e-265 918.3 569 82.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.1e-264 916.4 569 81.7
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 2.5e-264 915.2 567 81.5
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.3e-264 914.4 617 76.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 9.5e-264 913.3 570 80.4
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 2.8e-263 911.8 570 79.8
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 3.6e-263 911.4 557 82.0
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.0e-262 909.8 569 80.3
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.0e-262 909.8 569 81.2
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.0e-262 907.9 570 80.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.0e-262 907.9 569 80.7
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.0e-261 905.6 569 80.0
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 2.6e-261 905.2 567 81.0
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 3.4e-261 904.8 570 79.6
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.7e-261 904.0 582 79.6
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 5.7e-261 904.0 570 79.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.7e-260 902.5 570 79.5
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 2.2e-260 902.1 570 79.5
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.7e-260 901.4 567 79.9
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.1e-259 899.8 570 78.9
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.4e-259 899.4 567 79.9
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.8e-259 899.0 569 79.6
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.4e-259 897.5 567 80.1
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 5.4e-259 897.5 567 79.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.0e-259 897.1 567 79.7
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.2e-258 896.3 571 79.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 5.9e-258 894.0 650 72.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.3e-257 892.9 567 78.0
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.0e-257 891.7 567 79.5
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 5.0e-257 891.0 553 81.0
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 8.6e-257 890.2 569 78.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.6e-257 890.2 581 79.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 9.5e-256 886.7 567 78.3
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.6e-255 885.9 569 78.9
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 6.2e-255 884.0 567 78.5
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.0e-255 883.6 569 77.9
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 6.8e-254 880.6 567 77.8
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.2e-253 879.8 569 78.0
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.5e-253 879.4 567 77.6
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.0e-253 879.0 568 77.6
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.6e-253 878.6 566 78.3
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.8e-253 877.5 567 77.6
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.8e-253 877.5 567 77.6
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.8e-253 877.5 567 77.6
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 7.5e-253 877.1 595 76.8
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.2e-252 875.5 588 76.7
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 3.7e-252 874.8 563 77.8
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 4.9e-252 874.4 566 78.6
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 6.4e-252 874.0 567 77.6
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.4e-251 872.1 571 78.6
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.4e-251 872.1 625 72.3
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 5.4e-251 870.9 563 78.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.2e-250 869.8 565 77.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.7e-250 868.6 568 75.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.5e-250 868.2 565 79.8
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 6.0e-250 867.5 567 76.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.3e-249 865.5 572 77.1
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 3.0e-249 865.1 550 80.4
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.2e-247 859.8 567 76.4
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.1e-247 859.0 533 81.8
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.4e-246 856.3 569 76.1
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 7.5e-245 850.5 548 78.6
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.7e-244 848.2 530 80.2
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-243 846.7 591 73.9
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 8.6e-241 837.0 567 74.6
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.5e-240 836.3 567 74.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.4e-236 820.5 559 76.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.6e-234 816.2 559 75.5
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.2e-229 800.0 585 70.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.9e-227 792.7 600 69.3
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.3e-225 786.6 504 78.8
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.0e-222 775.0 494 78.9
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 5.8e-221 771.2 622 64.1
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.3e-220 770.0 567 70.2
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.0e-217 758.8 445 85.8
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 2.8e-215 752.3 573 66.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.5e-213 745.0 568 68.1
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 9.9e-213 743.8 567 66.7
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.1e-206 723.8 438 82.0
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.9e-194 681.0 517 69.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.8e-190 669.8 442 78.1
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.9e-190 667.9 504 70.0
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 9.7e-184 647.5 396 80.8
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.4e-174 617.1 575 56.0
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 9.1e-166 587.8 563 53.1
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 3.8e-164 582.4 573 53.4
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 7.0e-158 561.6 436 65.4
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.3e-148 530.0 367 74.4
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 9.5e-147 524.6 302 86.4
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 7.8e-141 505.0 598 47.0
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 7.3e-139 498.4 418 62.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 6.0e-133 478.8 572 45.6
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.6e-128 463.4 314 74.8
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-123 448.0 495 53.1
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.3e-123 446.0 258 85.7
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 7.6e-112 408.7 280 76.1
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.0e-108 396.7 441 51.5
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.1e-106 388.7 215 87.0
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 4.6e-101 372.9 318 63.8
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.6e-93 346.3 278 65.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 8.2e-74 282.3 659 32.3
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.9e-70 271.2 541 35.5
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 5.3e-65 253.1 148 85.1
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 7.2e-54 216.1 122 86.9
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 7.2e-54 216.1 122 86.9
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.7e-53 214.2 122 84.4
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.1e-45 186.4 102 89.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.3e-44 184.5 107 85.0
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 7.7e-40 169.5 614 26.9
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.4e-33 146.7 96 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 9.2e-33 146.0 185 46.5
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.7e-32 144.4 120 57.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 2.5e-30 137.9 98 70.4
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.4e-27 127.1 99 61.6
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.8e-27 126.7 73 82.2
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 8.6e-23 112.8 67 76.1
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.9e-22 111.7 66 80.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.7e-18 98.6 78 57.7
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 5.4e-17 93.6 634 22.1
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 7.8e-16 89.7 49 85.7
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.7e-15 88.6 93 54.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 5.1e-15 87.0 48 85.4
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.6e-13 82.0 71 52.1
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.2e-11 75.9 201 30.8
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 5.6e-06 57.0 29 86.2


User provided reference genes

Program Settings