Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.4e-99 366.3 195 100.0
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.8e-79 298.9 191 87.4
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 3.0e-44 182.6 172 65.1
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 4.0e-41 172.2 193 57.5
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.1e-38 164.1 205 53.2
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 1.3e-26 124.0 184 45.7
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.4e-25 120.6 176 46.0
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.6e-24 116.3 178 45.5
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 2.6e-24 116.3 178 45.5
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 2.6e-24 116.3 179 46.9
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 4.5e-24 115.5 182 42.9
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 9.9e-24 114.4 178 42.1
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 9.9e-24 114.4 181 45.3
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 1.7e-23 113.6 172 44.8
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 6.4e-23 111.7 182 44.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 7.1e-22 108.2 178 44.4
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 2.1e-21 106.7 194 41.8
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 2.7e-21 106.3 183 41.5
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 7.9e-21 104.8 172 41.9
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.0e-20 104.4 173 42.8
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 5.1e-20 102.1 181 42.0
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 8.7e-20 101.3 183 45.4
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.5e-19 99.8 185 41.6
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.8e-18 96.3 199 42.7
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.7e-18 95.9 179 36.3
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 4.8e-18 95.5 174 40.8
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 4.8e-18 95.5 183 37.7
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 1.1e-17 94.4 182 39.6
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 3.1e-17 92.8 199 42.2
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.0e-17 91.3 184 38.0
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.2e-16 90.9 180 36.1
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.5e-16 90.5 177 38.4
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 2.0e-16 90.1 180 36.1
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 3.4e-16 89.4 93 58.1
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 3.4e-16 89.4 189 37.0
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 4.5e-16 89.0 106 50.0
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 5.8e-16 88.6 180 40.6
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.7e-15 87.0 180 33.9
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 2.2e-15 86.7 179 36.3
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.2e-15 86.7 177 37.3
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 6.4e-15 85.1 113 47.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 6.4e-15 85.1 93 57.0
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.1e-14 84.3 177 35.6
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 1.4e-14 84.0 200 35.5
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.4e-14 84.0 97 56.7
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.9e-14 83.6 196 37.2
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.9e-14 83.6 177 35.6
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.4e-14 83.2 113 46.9
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 3.2e-14 82.8 230 34.3
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 4.2e-14 82.4 189 32.3
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.5e-14 82.0 188 34.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 5.5e-14 82.0 195 39.0
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 9.3e-14 81.3 186 33.3
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.3e-14 81.3 113 47.8
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 9.3e-14 81.3 179 35.8
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.6e-13 80.5 73 58.9
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.6e-13 80.5 194 37.6
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 3.5e-13 79.3 124 45.2
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 4.6e-13 79.0 177 36.2
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 7.9e-13 78.2 177 35.6
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 7.9e-13 78.2 101 43.6
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 3.0e-12 76.3 181 34.3
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 3.0e-12 76.3 105 45.7
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 3.9e-12 75.9 190 35.3
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 5.1e-12 75.5 178 34.8
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 5.1e-12 75.5 181 33.1
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 5.1e-12 75.5 181 33.1
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 5.1e-12 75.5 191 29.3
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 6.7e-12 75.1 181 33.7
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 1.1e-11 74.3 193 33.2
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.9e-11 73.6 82 48.8
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 2.5e-11 73.2 194 35.1
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 5.6e-11 72.0 170 34.1
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 7.4e-11 71.6 177 35.0
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 9.6e-11 71.2 187 33.7
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 9.6e-11 71.2 180 33.9
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 2.1e-10 70.1 177 35.0
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 2.1e-10 70.1 176 31.2
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.8e-10 69.7 176 31.8
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 4.8e-10 68.9 140 37.1
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 4.8e-10 68.9 91 44.0
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 8.2e-10 68.2 182 33.0
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 8.2e-10 68.2 224 32.6
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 8.2e-10 68.2 176 30.7
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 1.1e-09 67.8 81 49.4
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 2.4e-09 66.6 176 31.2
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 3.1e-09 66.2 198 32.3
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 4.0e-09 65.9 193 32.6
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 4.0e-09 65.9 120 41.7
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 5.3e-09 65.5 187 32.1
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 6.9e-09 65.1 176 35.2
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 6.9e-09 65.1 192 31.2
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 9.0e-09 64.7 192 32.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.5e-08 63.9 138 37.7
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 2.6e-08 63.2 198 28.8
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.6e-08 63.2 170 36.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 4.5e-08 62.4 89 41.6
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 5.8e-08 62.0 179 31.3
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 7.6e-08 61.6 176 31.2
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.0e-07 61.2 88 42.0
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.0e-07 61.2 180 30.0
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.3e-07 60.8 176 31.2
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.7e-07 60.5 138 33.3
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 8.4e-07 58.2 179 29.6
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.1e-06 57.8 144 36.1
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.1e-06 57.8 179 29.6
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 3.2e-06 56.2 182 32.4
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 4.2e-06 55.8 115 35.7


User provided reference genes

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