Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 8.4e-146 520.8 355 100.0
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.4e-129 466.8 355 92.1
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 1.6e-120 436.8 360 86.7
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 2.3e-119 433.0 360 86.4
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 2.1e-104 383.3 352 81.5
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 8.8e-103 377.9 351 78.1
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 2.5e-102 376.3 350 73.4
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 4.3e-102 375.6 350 80.9
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 4.3e-102 375.6 350 81.4
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 7.4e-102 374.8 353 72.5
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.7e-101 373.6 350 81.4
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 2.2e-101 373.2 351 80.9
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 6.3e-101 371.7 350 81.1
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 6.3e-101 371.7 341 83.6
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 8.2e-101 371.3 351 79.8
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 1.1e-100 370.9 350 81.1
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.8e-100 370.2 349 80.8
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 4.1e-100 369.0 341 83.0
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 4.1e-100 369.0 343 83.4
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 5.3e-100 368.6 341 83.0
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 9.1e-100 367.9 352 81.2
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 1.2e-99 367.5 341 83.0
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 5.9e-99 365.2 351 80.9
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 7.7e-99 364.8 343 82.8
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 1.0e-98 364.4 341 82.4
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 1.3e-98 364.0 341 83.3
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 2.9e-98 362.8 347 79.8
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 6.5e-98 361.7 348 70.4
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 1.1e-97 360.9 349 79.9
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 5.5e-97 358.6 351 80.6
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 7.2e-97 358.2 339 81.1
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 1.2e-96 357.5 341 82.4
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 2.1e-96 356.7 338 76.0
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 1.0e-95 354.4 344 80.8
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 1.0e-95 354.4 344 80.2
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 1.8e-95 353.6 352 79.5
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 3.0e-95 352.8 350 78.9
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 3.0e-95 352.8 351 74.6
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 3.9e-95 352.4 356 79.2
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 6.7e-95 351.7 343 80.8
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 2.0e-94 350.1 354 68.4
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.4e-94 349.0 349 74.2
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 2.8e-93 346.3 344 78.8
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 6.3e-93 345.1 351 76.6
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 8.2e-93 344.7 352 78.1
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 8.2e-93 344.7 351 69.2
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.1e-92 344.4 368 62.5
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.8e-92 343.6 351 69.2
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 2.4e-92 343.2 346 78.0
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.2e-91 340.9 351 68.9
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.6e-91 339.7 344 78.5
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 4.5e-91 339.0 349 77.9
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 1.7e-90 337.0 350 69.7
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 1.5e-89 334.0 352 76.4
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 1.5e-89 334.0 347 77.5
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 1.5e-89 334.0 351 76.1
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 1.5e-89 334.0 346 71.7
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 1.9e-89 333.6 347 77.5
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.9e-89 333.6 341 78.0
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 5.5e-89 332.0 352 76.4
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 9.4e-89 331.3 351 69.5
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 6.1e-88 328.6 351 75.5
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 1.0e-87 327.8 332 75.3
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 3.0e-87 326.2 351 75.5
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 3.9e-87 325.9 352 71.6
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 5.2e-87 325.5 358 75.1
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 8.8e-87 324.7 347 75.8
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 8.8e-87 324.7 351 75.2
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 1.5e-86 323.9 354 66.9
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 2.6e-86 323.2 350 76.3
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 4.4e-86 322.4 381 70.3
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 2.2e-85 320.1 351 74.6
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.4e-84 317.4 352 47.2
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 3.1e-84 316.2 348 75.3
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 7.0e-84 315.1 346 75.1
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 7.0e-84 315.1 352 64.8
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 1.2e-83 314.3 351 73.8
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 5.9e-83 312.0 347 72.3
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 1.0e-82 311.2 340 75.9
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 1.7e-82 310.5 348 73.0
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.9e-82 309.7 351 66.1
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 5.0e-82 308.9 342 75.7
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 8.5e-82 308.1 351 72.6
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 2.5e-81 306.6 352 73.3
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 3.2e-81 306.2 351 72.6
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 5.5e-81 305.4 359 63.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.5e-81 305.4 329 75.7
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 7.2e-81 305.1 351 71.5
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 3.6e-80 302.8 344 73.0
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 3.6e-80 302.8 338 50.9
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 1.8e-79 300.4 343 72.3
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 2.0e-78 297.0 351 63.0
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 8.3e-77 291.6 351 71.5
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.4e-76 290.8 349 58.5
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.6e-72 277.3 350 69.4
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 2.6e-70 270.0 346 60.1
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 9.8e-70 268.1 347 62.5
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 1.4e-68 264.2 485 55.3
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 7.0e-68 261.9 341 57.2
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 3.5e-67 259.6 354 68.9
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.2e-64 251.1 383 53.0
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.3e-63 246.9 317 71.6
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 5.7e-62 242.3 348 65.5
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 2.8e-61 240.0 276 79.3
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 2.8e-61 240.0 352 65.6
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 4.9e-61 239.2 284 44.7
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.8e-60 237.3 357 40.3
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 1.8e-60 237.3 276 74.3
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 5.0e-58 229.2 350 54.9
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 5.0e-58 229.2 350 54.9
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 5.0e-58 229.2 342 53.8
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 6.6e-58 228.8 353 54.1
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 3.3e-57 226.5 353 53.8
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 1.0e-55 221.5 352 63.6
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 5.8e-54 215.7 268 78.0
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 1.6e-51 207.6 363 50.1
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 8.6e-50 201.8 279 58.8
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 5.2e-47 192.6 115 76.5
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 1.5e-46 191.0 349 53.0
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 6.4e-45 185.7 248 78.2
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 7.8e-43 178.7 354 46.3
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 4.3e-41 172.9 291 68.4
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 5.6e-41 172.6 108 75.0
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 3.1e-39 166.8 112 67.9
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 3.1e-39 166.8 343 46.6
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 3.4e-38 163.3 107 70.1
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 2.2e-37 160.6 105 68.6
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 9.2e-36 155.2 309 54.7
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 9.2e-36 155.2 110 65.5
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 8.6e-34 148.7 108 70.4
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 4.3e-33 146.4 348 36.5
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 3.6e-32 143.3 105 62.9
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 6.2e-32 142.5 466 37.3
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 3.1e-31 140.2 78 80.8
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 2.1e-27 127.5 271 69.7
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.5e-25 121.3 88 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 5.1e-18 96.3 101 49.5
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.9e-17 94.4 71 66.2
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 1.3e-16 91.7 50 82.0
MCO12G400 Micromonas commoda HOM05D004768 ORTHO05D005812 1.1e-15 88.6 342 43.0
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 5.3e-15 86.3 99 40.4
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-15 86.3 58 63.8
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 1.5e-14 84.7 128 40.6
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 1.7e-13 81.3 48 79.2
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.7e-13 81.3 47 80.9
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 3.8e-13 80.1 102 49.0
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-13 79.7 114 37.7
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 8.4e-13 79.0 80 51.2
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 2.1e-11 74.3 132 63.6
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 6.7e-10 69.3 35 88.6
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 7.4e-09 65.9 88 43.2
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 6.2e-08 62.8 123 34.1
arahy.Tifrunner.gnm1.ann1.14B96B Arachis hypogaea HOM05D004768 ORTHO05D005812 1.4e-07 61.6 42 66.7
Cre04.g222000 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 2.4e-07 60.8 144 33.3
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 9.0e-07 58.9 113 35.4
Oeu011602.1 Olea europaea HOM05D002634 ORTHO05D003100 9.0e-07 58.9 114 35.1
Hund05323 Selenicereus undatus HOM05D002634 ORTHO05D003100 9.0e-07 58.9 122 35.2
CiPaw.16G035100 Carya illinoinensis HOM05D002634 ORTHO05D003100 1.2e-06 58.5 124 31.5
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 1.2e-06 58.5 112 34.8
Cfa026486 Carpinus fangiana HOM05D002410 ORTHO05D002805 1.5e-06 58.2 110 34.5
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 1.5e-06 58.2 114 36.8
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.5e-06 58.2 111 36.0
HanXRQChr04g0103361 Helianthus annuus HOM05D002634 ORTHO05D003100 2.6e-06 57.4 114 36.0
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 2.6e-06 57.4 109 32.1
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 2.6e-06 57.4 111 36.0
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 3.4e-06 57.0 122 32.8
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 3.4e-06 57.0 124 34.7
TAR381G1718 Trochodendron aralioides HOM05D002634 ORTHO05D003100 3.4e-06 57.0 122 33.6
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 4.5e-06 56.6 122 32.0
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 4.5e-06 56.6 38 65.8
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 4.5e-06 56.6 114 32.5
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.5e-06 56.6 111 35.1
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 4.5e-06 56.6 111 36.0
Lsat_1_v5_gn_1_24041 Lactuca sativa HOM05D002634 ORTHO05D003100 5.8e-06 56.2 114 36.0
QL02p003120 Quercus lobata HOM05D002634 ORTHO05D003100 5.8e-06 56.2 117 35.9
QL03p022872 Quercus lobata HOM05D002634 ORTHO05D003100 5.8e-06 56.2 117 35.9
Rhsim10G0207700 Rhododendron simsii HOM05D002410 ORTHO05D002805 5.8e-06 56.2 115 35.7
AUR62003945 Chenopodium quinoa HOM05D002634 ORTHO05D003100 7.6e-06 55.8 124 35.5
Cc10_g05270 Coffea canephora HOM05D002634 ORTHO05D003100 7.6e-06 55.8 114 36.0
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 7.6e-06 55.8 124 33.9
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 7.6e-06 55.8 117 32.5
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 7.6e-06 55.8 111 36.0
VMungo1309G3030 Vigna mungo HOM05D002634 ORTHO05D003100 7.6e-06 55.8 117 34.2
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 1.0e-05 55.5 122 33.6
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.0e-05 55.5 126 31.7
PSO541G4236 Papaver somniferum HOM05D002634 ORTHO05D003100 1.0e-05 55.5 113 35.4
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 1.0e-05 55.5 111 35.1


User provided reference genes

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