Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 0.0e+00 1194.5 698 100.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.1e-278 962.2 701 75.2
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.1e-271 939.9 703 79.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 6.4e-267 924.1 701 79.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 3.2e-226 788.9 696 67.7
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.1e-217 759.6 702 64.8
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.8e-216 754.6 708 66.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 9.1e-213 744.2 706 65.6
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.0e-211 740.7 706 65.3
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.6e-211 738.0 706 63.6
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 8.6e-211 737.6 703 63.9
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.5e-210 736.1 702 62.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.5e-210 736.1 708 66.7
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.3e-210 735.7 696 66.2
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.7e-209 731.9 702 65.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 6.8e-208 728.0 696 65.5
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.0e-207 726.5 696 65.7
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.4e-207 725.3 696 64.9
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.7e-207 724.9 696 65.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.5e-207 724.5 696 65.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 7.0e-205 718.0 702 62.0
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.3e-203 713.0 708 63.7
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.3e-203 713.0 696 64.4
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 4.3e-202 708.8 707 60.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 5.6e-202 708.4 703 59.7
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.1e-201 706.4 710 62.8
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.1e-201 704.9 757 52.6
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 6.1e-201 704.9 700 62.4
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.0e-199 699.9 729 59.1
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.4e-199 699.1 700 64.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.9e-197 693.3 702 62.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.0e-196 689.9 707 56.4
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.1e-194 684.1 701 61.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.5e-194 683.7 713 59.7
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 3.3e-194 682.6 702 63.4
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 7.3e-194 681.4 703 63.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.3e-192 676.4 727 60.4
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 4.0e-192 675.6 700 61.4
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 5.4e-189 665.2 703 59.9
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.0e-187 661.0 700 61.9
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 3.9e-187 659.1 701 60.5
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.9e-186 656.8 702 62.0
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.5e-186 656.4 707 59.5
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 5.2e-184 648.7 707 56.4
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.7e-182 643.7 714 56.3
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.7e-182 643.7 771 48.4
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.1e-180 636.7 700 53.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.0e-179 634.4 700 59.3
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.7e-179 633.6 700 59.1
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 8.6e-179 631.3 707 55.6
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 7.3e-178 628.2 699 59.5
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 8.1e-177 624.8 720 57.1
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 8.1e-177 624.8 730 57.0
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.8e-176 623.6 667 60.3
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 7.6e-175 618.2 702 59.3
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-173 614.4 700 52.9
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.6e-172 610.5 631 65.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 3.0e-171 606.3 700 58.0
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 6.6e-171 605.1 706 56.7
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.1e-170 604.4 737 52.4
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 7.3e-170 601.7 700 57.9
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.1e-168 597.8 701 57.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.1e-168 597.8 705 57.6
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.4e-168 597.4 705 57.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.8e-168 597.0 703 54.9
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.4e-168 596.7 697 57.7
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.4e-168 596.7 697 56.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.4e-168 596.7 652 61.3
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 3.1e-168 596.3 700 58.4
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 7.6e-167 591.7 699 56.5
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-166 590.9 697 54.8
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.7e-166 590.5 712 48.0
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.7e-166 590.5 703 56.3
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.2e-166 590.1 697 54.4
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.2e-166 590.1 708 55.9
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 4.9e-166 589.0 698 56.3
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 4.9e-166 589.0 693 57.4
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.4e-165 587.4 697 57.1
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.9e-165 587.0 698 55.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.2e-165 586.3 702 53.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.1e-164 583.6 702 55.6
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.5e-164 582.8 699 56.5
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 4.6e-164 582.4 703 57.5
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 6.0e-164 582.0 694 55.8
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 6.0e-164 582.0 698 55.7
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.0e-163 579.7 700 54.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 3.9e-163 579.3 698 56.7
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 6.6e-163 578.6 703 56.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 9.6e-162 574.7 701 52.8
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 6.4e-158 562.0 704 56.1
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.9e-157 560.5 705 55.5
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.3e-155 553.5 704 55.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.5e-154 550.1 704 56.1
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 4.0e-152 542.7 631 57.1
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 4.5e-151 539.3 703 49.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 6.5e-150 535.4 694 54.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 4.6e-148 529.3 706 53.3
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.0e-142 509.2 706 46.3
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-139 500.0 525 57.0
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.5e-138 497.7 571 57.1
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 2.5e-138 496.9 538 59.1
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 4.8e-137 492.7 471 66.5
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.1e-136 491.5 633 55.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.0e-134 485.0 698 44.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.4e-133 481.1 703 49.5
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-133 479.6 518 61.8
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.1e-128 463.0 709 42.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.9e-127 459.1 533 48.4
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.5e-125 453.8 708 41.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.1e-124 450.7 709 47.7
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 7.9e-124 448.7 722 43.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.0e-123 446.8 699 43.3
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-120 438.3 724 40.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.3e-118 431.4 705 40.4
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 8.2e-113 412.1 625 51.4
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 9.1e-104 382.1 517 52.2
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 8.8e-99 365.5 535 46.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.7e-97 361.3 314 66.6
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 3.7e-97 360.1 460 46.7
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-89 332.4 488 42.8
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.2e-84 316.2 525 40.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-83 313.2 478 42.7
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 2.3e-78 297.7 716 41.6
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 6.6e-78 296.2 346 49.7
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.1e-75 288.9 419 50.8
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.0e-74 284.6 254 76.8
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.3e-70 271.2 276 64.9
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.1e-64 250.4 659 33.8
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.6e-60 237.3 438 38.6
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.0e-54 219.2 133 76.7
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.5e-53 214.5 273 53.5
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.5e-50 205.3 183 57.9
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 3.2e-48 197.6 133 69.9
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 7.4e-45 186.4 567 28.4
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 8.4e-41 172.9 706 29.5
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.5e-39 167.5 209 56.0
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.8e-38 165.2 134 63.4
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.0e-34 151.8 136 58.8
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 8.4e-33 146.4 211 51.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 7.1e-32 143.3 125 58.4
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.2e-31 142.5 123 55.3
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-31 142.1 133 69.9
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-31 141.7 125 56.0
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 3.5e-31 141.0 141 68.1
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.3e-28 132.5 505 28.1
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 4.8e-28 130.6 129 52.7
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 4.1e-27 127.5 109 57.8
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-26 124.8 98 68.4
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.0e-25 122.9 262 35.9
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.7e-22 110.2 94 63.8
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.3e-20 105.9 158 42.4
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-20 103.6 100 54.0
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.4e-19 102.4 71 67.6
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.4e-19 101.7 135 40.7
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.0e-18 98.6 99 49.5
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-18 98.2 100 51.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-18 98.2 100 51.0
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-17 95.9 101 51.5
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-16 90.9 98 49.0
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-15 89.0 100 48.0
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 2.1e-15 88.6 128 43.8
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-15 88.2 100 49.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.7e-15 88.2 52 73.1
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.9e-15 86.7 100 48.0
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-14 85.9 114 47.4
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.8e-14 85.5 289 28.0
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.1e-13 82.8 40 87.5
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.1e-13 82.8 162 37.7
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-13 82.0 58 70.7
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 7.4e-13 80.1 260 27.3
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.7e-12 79.0 74 55.4
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-12 78.6 58 67.2
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.7e-12 77.8 58 67.2
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.8e-12 77.4 58 67.2
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-12 77.0 58 67.2
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-12 77.0 58 67.2
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 6.3e-12 77.0 65 56.9
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 8.2e-12 76.6 75 54.7
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 5.3e-11 73.9 277 40.8
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.2e-08 64.3 67 50.7
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 7.2e-08 63.5 51 54.9
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.1e-07 60.5 39 61.5
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.1e-07 60.5 39 61.5


User provided reference genes

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