Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 7.5e-176 620.5 342 100.0
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 2.3e-145 519.2 314 87.6
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 4.0e-145 518.5 309 88.3
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 8.9e-137 490.7 316 81.3
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.6e-136 487.6 318 81.8
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.7e-135 486.5 306 86.3
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.2e-135 486.1 318 79.6
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.8e-135 485.3 308 82.8
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.1e-134 483.8 323 79.9
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.2e-134 482.3 326 77.6
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.1e-134 481.9 326 77.9
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 4.1e-134 481.9 322 78.9
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.3e-132 476.9 322 77.0
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 3.0e-132 475.7 324 78.1
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 5.1e-132 474.9 326 77.3
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 5.1e-132 474.9 317 78.2
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.5e-131 473.4 322 76.1
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.3e-131 472.2 307 80.1
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 5.6e-131 471.5 319 77.4
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.1e-129 467.2 318 76.4
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.4e-129 466.1 318 76.7
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 4.0e-129 465.3 318 77.7
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 5.2e-129 464.9 317 78.2
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 9.0e-129 464.2 324 77.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.9e-127 459.1 316 77.8
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.8e-127 458.8 321 75.7
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.8e-127 458.8 321 75.7
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 3.8e-127 458.8 319 78.1
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 6.4e-127 458.0 321 75.7
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 8.4e-127 457.6 315 75.9
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.4e-126 456.8 319 75.2
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.9e-126 456.4 321 75.4
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.2e-126 455.7 321 75.4
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.2e-126 455.3 298 77.9
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.2e-125 453.8 310 76.8
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.6e-125 453.4 323 75.9
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.7e-125 452.6 314 74.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.7e-125 452.6 319 76.2
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.5e-125 452.2 315 74.9
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 7.8e-125 451.1 310 76.5
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.7e-124 449.9 319 74.6
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.7e-124 449.9 326 72.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 3.0e-124 449.1 322 71.4
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 3.9e-124 448.7 324 73.5
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 5.1e-124 448.4 319 74.9
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 5.1e-124 448.4 318 75.5
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 6.6e-124 448.0 311 76.5
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 8.7e-124 447.6 315 72.4
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 8.7e-124 447.6 322 71.1
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 2.5e-123 446.0 319 75.9
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.6e-122 443.4 332 72.3
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.1e-122 443.0 310 72.3
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 2.1e-122 443.0 311 75.6
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.1e-122 443.0 322 70.5
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.1e-122 443.0 318 75.2
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 2.8e-122 442.6 313 73.2
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 4.8e-122 441.8 318 74.2
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 4.8e-122 441.8 334 70.4
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.1e-121 439.1 321 74.1
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 3.1e-121 439.1 317 75.1
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 4.0e-121 438.7 334 70.7
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 3.4e-120 435.6 325 71.1
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.5e-120 435.3 324 73.1
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.3e-119 433.7 289 75.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 2.2e-119 433.0 319 71.8
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.2e-119 433.0 319 73.0
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 8.4e-119 431.0 317 73.5
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.1e-118 430.6 295 74.6
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.4e-118 430.3 318 72.0
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 5.4e-118 428.3 348 67.0
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 7.1e-118 427.9 311 73.0
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.6e-117 426.8 292 74.7
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.6e-117 425.2 291 74.9
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 5.1e-116 421.8 316 68.0
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 6.7e-116 421.4 328 66.5
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.9e-115 419.9 327 68.2
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 5.6e-115 418.3 322 68.0
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 7.4e-115 417.9 325 68.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 9.6e-115 417.5 319 69.0
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.1e-114 416.4 294 71.4
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 8.1e-114 414.5 290 72.1
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.8e-113 413.3 321 67.3
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 3.1e-113 412.5 333 67.9
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 5.3e-113 411.8 321 69.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.2e-112 410.6 319 68.3
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 1.2e-112 410.6 320 68.8
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.5e-112 410.2 321 70.1
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.5e-112 410.2 351 64.4
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 5.8e-112 408.3 320 68.8
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 5.8e-112 408.3 320 67.2
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 1.7e-111 406.8 298 70.8
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 4.9e-111 405.2 318 67.3
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.1e-110 404.1 287 70.7
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.9e-110 403.3 308 71.4
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 3.2e-110 402.5 317 68.8
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 3.2e-110 402.5 317 68.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 7.1e-110 401.4 389 59.4
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 9.3e-110 401.0 313 69.0
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 9.3e-110 401.0 319 66.1
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-108 397.5 318 67.6
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.0e-108 397.5 318 67.6
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.0e-108 397.5 295 74.2
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.3e-108 397.1 297 68.7
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.8e-108 396.7 307 68.7
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.3e-108 396.4 311 68.5
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 8.7e-108 394.4 311 68.5
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.5e-107 393.7 318 64.8
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.5e-107 392.9 311 68.5
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 4.3e-107 392.1 311 68.5
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 4.3e-107 392.1 302 68.9
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 7.4e-107 391.3 311 68.2
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 7.4e-107 391.3 318 64.8
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.3e-106 390.6 252 77.8
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.3e-106 390.6 384 59.9
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 6.2e-106 388.3 313 65.2
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 8.2e-106 387.9 403 54.3
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.8e-105 386.7 319 65.2
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.8e-105 386.7 338 64.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 3.1e-105 386.0 316 67.4
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.1e-105 386.0 316 64.9
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.2e-104 384.0 340 61.5
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-104 383.3 302 68.9
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 4.5e-104 382.1 327 61.8
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 4.9e-103 378.6 320 65.0
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.9e-100 369.0 329 62.9
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.1e-94 350.9 332 62.0
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.6e-93 347.1 312 62.5
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 3.9e-92 342.4 319 58.3
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.1e-89 334.3 316 57.9
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 3.9e-84 315.8 295 58.6
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.4e-83 312.4 317 56.2
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 5.3e-81 305.4 310 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.2e-80 304.3 307 55.4
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 7.7e-80 301.6 311 57.9
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-79 300.8 318 56.3
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 3.0e-76 289.7 249 59.8
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 4.2e-70 269.2 328 50.0
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 2.1e-69 266.9 312 50.3
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.4e-68 264.2 322 52.2
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.4e-67 259.2 178 73.6
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.1e-65 254.6 262 56.1
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-62 243.4 215 64.7
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 9.4e-62 241.5 168 73.2
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-58 230.3 258 54.7
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-57 228.0 150 74.7
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 7.0e-57 225.3 193 62.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.7e-53 212.6 135 81.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.7e-50 204.1 181 65.7
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.9e-47 193.4 178 62.4
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.2e-43 181.4 172 64.0
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.5e-43 181.0 303 39.9
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.1e-36 156.8 157 61.1
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 5.8e-35 152.5 112 75.0
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 4.9e-34 149.4 324 35.2
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 7.3e-30 135.6 145 57.9
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 3.1e-28 130.2 310 32.9
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-26 124.4 79 77.2
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.5e-22 110.5 79 64.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.3e-22 110.2 67 77.6
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 7.6e-19 99.0 100 59.0
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.5e-16 90.1 90 55.6
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.6e-13 81.3 61 67.2
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.8e-10 70.1 108 46.3
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.9e-09 67.8 65 53.8
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 2.4e-09 67.4 93 53.8
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 4.2e-09 66.6 52 61.5
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 9.3e-09 65.5 43 67.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.3e-07 61.6 38 84.2


User provided reference genes

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