Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 0.0e+00 1134.8 549 100.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.3e-299 1031.6 549 90.7
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 9.2e-293 1009.6 549 87.1
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 4.6e-292 1007.3 548 87.8
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 2.0e-287 991.9 596 80.5
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.2e-279 966.1 550 83.3
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 1.7e-278 962.2 549 83.2
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 5.4e-277 957.2 549 83.8
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.7e-276 954.9 549 83.2
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 7.8e-276 953.4 550 82.7
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 2.3e-275 951.8 548 81.4
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 5.1e-275 950.7 553 83.0
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 6.6e-275 950.3 548 81.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 1.9e-274 948.7 549 83.4
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 7.3e-274 946.8 548 81.9
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 9.5e-274 946.4 552 81.9
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 2.1e-273 945.3 552 83.2
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 8.1e-273 943.3 548 80.8
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.1e-272 943.0 549 81.8
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.4e-272 942.6 548 81.6
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 4.0e-272 941.0 549 82.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 8.9e-272 939.9 549 81.8
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.2e-271 939.5 552 81.0
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.2e-271 939.5 549 82.1
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.2e-271 939.5 548 81.4
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 2.0e-271 938.7 555 81.3
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 7.6e-271 936.8 549 82.7
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 1.3e-270 936.0 549 80.9
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.4e-269 932.6 551 82.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 2.1e-268 928.7 549 80.7
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 3.5e-268 927.9 549 80.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.3e-267 925.2 551 81.1
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.5e-266 922.5 601 76.4
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 3.3e-266 921.4 549 80.7
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 4.7e-265 917.5 549 79.4
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 4.7e-265 917.5 554 79.6
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.1e-264 916.4 579 77.9
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 2.4e-264 915.2 555 78.9
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 2.4e-264 915.2 551 79.1
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 5.2e-264 914.1 550 80.0
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.0e-264 913.3 550 80.4
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 9.0e-264 913.3 549 80.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.2e-263 912.9 549 78.9
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 5.8e-263 910.6 549 78.9
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 4.9e-262 907.5 549 78.5
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 6.4e-262 907.1 549 78.0
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.4e-261 905.2 550 78.2
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.4e-261 905.2 555 78.6
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 3.2e-261 904.8 549 78.3
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 4.2e-261 904.4 549 78.5
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.4e-261 904.0 552 78.4
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.4e-261 904.0 552 78.4
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 5.4e-261 904.0 554 78.9
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 7.1e-261 903.7 554 79.1
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 9.3e-261 903.3 548 78.6
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 2.7e-260 901.7 555 78.2
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.7e-260 901.7 554 77.1
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 3.5e-260 901.4 549 78.1
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 6.0e-260 900.6 549 78.3
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 7.8e-260 900.2 578 75.1
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.0e-259 899.8 549 78.0
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.0e-259 899.8 549 78.0
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.0e-259 899.8 549 78.1
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.7e-259 899.0 549 78.0
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.7e-259 899.0 556 78.6
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.3e-259 898.7 549 78.1
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 3.9e-259 897.9 549 77.8
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 8.7e-259 896.7 552 77.9
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.1e-258 896.3 549 78.0
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.1e-258 896.3 572 76.4
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.1e-258 896.3 570 76.5
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 3.3e-258 894.8 531 79.8
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 7.3e-258 893.6 549 77.6
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.3e-257 892.9 549 77.6
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.6e-257 892.5 558 76.5
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 2.8e-257 891.7 551 77.7
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 4.8e-257 891.0 554 78.2
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 6.2e-257 890.6 549 77.0
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 4.0e-256 887.9 551 77.7
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.3e-254 882.9 549 76.9
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.2e-253 878.2 562 76.0
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 9.3e-253 876.7 549 76.3
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 1.3e-251 872.8 545 77.6
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.3e-251 872.1 604 70.9
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.5e-250 869.4 550 76.2
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 6.2e-249 864.0 577 73.8
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 6.9e-248 860.5 501 81.0
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 3.4e-247 858.2 555 74.1
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.3e-246 856.3 601 70.4
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 4.9e-246 854.4 551 75.9
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 3.2e-245 851.7 549 75.2
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 2.1e-244 849.0 576 71.9
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 5.6e-242 840.9 493 82.8
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 7.4e-242 840.5 563 71.6
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 6.2e-241 837.4 557 74.5
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 8.2e-241 837.0 556 71.6
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 3.1e-240 835.1 555 71.9
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 8.4e-238 827.0 476 82.1
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 7.1e-237 823.9 584 69.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.2e-236 823.2 549 71.4
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.6e-236 822.8 572 71.3
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 2.1e-236 822.4 557 71.3
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 6.0e-236 820.8 561 72.0
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.5e-234 816.2 623 67.3
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 5.7e-234 814.3 491 80.2
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.3e-233 813.1 566 68.0
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.0e-230 803.5 564 68.4
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 7.9e-228 793.9 569 68.2
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 7.9e-228 793.9 565 68.1
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.0e-227 793.5 551 70.6
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 3.4e-223 778.5 498 77.3
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 5.5e-221 771.2 562 67.8
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 4.7e-220 768.1 566 66.3
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 6.1e-220 767.7 563 65.5
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 1.1e-218 763.5 556 68.7
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 5.2e-203 711.4 551 63.5
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.2e-202 710.3 491 73.7
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.3e-201 706.8 549 63.0
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 4.1e-200 701.8 526 65.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 3.8e-198 695.3 765 52.2
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 7.3e-181 637.9 389 78.1
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.6e-172 610.1 337 87.2
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.6e-172 609.0 510 59.8
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 2.9e-169 599.4 559 55.3
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.8e-163 578.2 550 56.4
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.9e-161 572.0 603 48.6
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.5e-159 565.8 550 52.7
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.5e-157 560.5 549 55.0
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.4e-155 553.9 562 52.1
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.6e-154 549.7 393 68.4
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 4.4e-154 548.9 337 78.9
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 5.8e-146 521.9 320 78.1
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.8e-139 500.4 562 47.7
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.0e-134 483.0 276 83.0
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.7e-127 459.9 342 69.3
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.9e-127 458.4 504 50.8
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 3.9e-110 402.9 309 68.6
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 8.8e-110 401.7 390 58.5
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 5.5e-104 382.5 264 71.2
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.4e-104 381.7 297 62.3
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 4.7e-79 299.7 493 38.3
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 3.7e-76 290.0 493 37.1
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.0e-73 282.0 581 32.4
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.3e-73 281.6 233 60.9
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 1.7e-73 281.2 153 84.3
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 2.0e-69 267.7 171 74.9
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 3.9e-65 253.4 313 45.0
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.3e-64 250.4 201 60.2
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 3.4e-53 213.8 238 54.6
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.7e-52 211.5 130 76.2
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 3.6e-47 193.7 249 46.2
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 3.7e-44 183.7 139 73.4
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-40 172.2 145 65.5
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.6e-40 169.1 170 53.5
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.2e-37 162.2 100 75.0
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 3.0e-33 147.5 108 67.6
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.2e-26 125.6 64 92.2
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 1.5e-24 118.6 59 83.1
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 2.0e-21 108.2 61 73.8
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 4.9e-20 103.6 116 47.4
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 3.2e-19 100.9 69 65.2
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.7e-18 97.8 149 38.3
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.1e-17 93.6 50 88.0
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 3.3e-16 90.9 82 61.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 1.3e-15 89.0 79 58.2
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.5e-13 82.0 51 78.4
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 3.4e-13 80.9 50 76.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 6.5e-12 76.6 45 84.4
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 2.5e-11 74.7 41 80.5
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 8.7e-09 66.2 79 46.8
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 6.3e-07 60.1 34 79.4
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 8.2e-07 59.7 252 26.2
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.4e-06 58.2 36 66.7
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 9.0e-06 56.2 257 26.5


User provided reference genes

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